Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0496
         (670 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g23620.1 68417.m03402 50S ribosomal protein-related contains ...    29   3.7  
At1g56040.1 68414.m06434 U-box domain-containing protein contain...    28   4.9  

>At4g23620.1 68417.m03402 50S ribosomal protein-related contains
           weak similarity to 50S ribosomal protein L25 (TL5).
           (Swiss-Prot:P56930) [Thermus thermophilus]
          Length = 264

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = +2

Query: 20  SENSNNIRKFVNEFGYSLKLNRL 88
           S  +N IRK VN  GYS  L+RL
Sbjct: 96  SVQTNQIRKLVNHLGYSFFLSRL 118


>At1g56040.1 68414.m06434 U-box domain-containing protein contains
           Pfam profile PF04564: U-box domain
          Length = 437

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 10/37 (27%), Positives = 23/37 (62%)
 Frame = +3

Query: 408 KEKDRETLRHDIELYKRMADKIEREIETFYDEYPRRS 518
           ++K+ E ++  +E Y+R  + +  E+ T+ D+Y + S
Sbjct: 263 EKKELEEVKLKLETYEREQENLSSEVRTWQDKYEQES 299


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,710,025
Number of Sequences: 28952
Number of extensions: 245878
Number of successful extensions: 569
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 557
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 569
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1412971776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)