Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0495
         (667 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g67160.1 68414.m07640 F-box family protein similar to F-box p...    30   1.6  
At5g63780.1 68418.m08005 zinc finger (C3HC4-type RING finger) fa...    28   6.4  
At5g08750.1 68418.m01039 zinc finger (C3HC4-type RING finger) fa...    28   6.4  

>At1g67160.1 68414.m07640 F-box family protein similar to F-box
           protein family, AtFBX7 (GI:20197899) [Arabidopsis
           thaliana]
          Length = 450

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = -2

Query: 660 NVDIKLGLLLQQDQKNDVFKFRSVNNIVIAPAKTGSDNNNKNAVIPTAH 514
           +++I   +L   D+  D F F ++++ V    K G DNN+   + P  H
Sbjct: 153 HIEIDKAVLWVDDKSRDYFVFCNLSSYVAYHHKRGDDNNSWKVLQPIKH 201


>At5g63780.1 68418.m08005 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 367

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +3

Query: 3   YWNIIFYFWYLIRNNW 50
           YW I+F FW+L+   W
Sbjct: 341 YWAILFIFWFLVFGIW 356


>At5g08750.1 68418.m01039 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 363

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +3

Query: 3   YWNIIFYFWYLIRNNW 50
           YW I+F FW+L+   W
Sbjct: 337 YWAILFVFWFLVFGIW 352


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,999,258
Number of Sequences: 28952
Number of extensions: 178019
Number of successful extensions: 324
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 321
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 324
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1403159472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)