Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0494
         (656 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces ...   146   3e-36
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    28   1.4  
SPBC1A4.07c |||U3 snoRNP-associated protein Sof1|Schizosaccharom...    28   1.4  
SPBC18H10.11c |||conserved fungal protein|Schizosaccharomyces po...    27   3.1  
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos...    26   5.5  
SPBC2D10.11c |||nucleosome assembly protein Nap2 |Schizosaccharo...    25   9.6  

>SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 253

 Score =  146 bits (353), Expect = 3e-36
 Identities = 67/106 (63%), Positives = 85/106 (80%), Gaps = 1/106 (0%)
 Frame = +1

Query: 202 KNRQTREHLLVFFTNQRIEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDN 381
           K +   E  L     +  +I+D+FL P LNDEV+K++PVQKQTRAGQRTRFKAFV IGD+
Sbjct: 48  KIKSIEEIYLYSLPIKEYQIVDYFL-PRLNDEVMKVVPVQKQTRAGQRTRFKAFVVIGDS 106

Query: 382 NGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIGS-HT 516
           +GH+GLG+KC+KEVATAIRGAII+ KLS++P+RRGYWG  +G  HT
Sbjct: 107 DGHVGLGIKCAKEVATAIRGAIIMGKLSIMPIRRGYWGTALGDPHT 152



 Score = 85.4 bits (202), Expect = 6e-18
 Identities = 35/48 (72%), Positives = 43/48 (89%)
 Frame = +3

Query: 510 PHTVPCKVTGKCGSVTVRLIPAPRCTGIVSAPVPKKLLQMAGVQDCYT 653
           PHTVP KV+GKCGSVTVRL+PAPR  G+V+APV K+ LQ+AG++DCYT
Sbjct: 150 PHTVPVKVSGKCGSVTVRLVPAPRGAGLVAAPVTKRFLQLAGIEDCYT 197



 Score = 62.9 bits (146), Expect = 4e-11
 Identities = 26/37 (70%), Positives = 33/37 (89%)
 Frame = +2

Query: 143 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKE 253
           ++++KEWVPVTKLGRLV+ GKI  +E IYL+SLPIKE
Sbjct: 28  RDEEKEWVPVTKLGRLVKAGKIKSIEEIYLYSLPIKE 64


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -1

Query: 140 RAHDHGRDHDRVHEDRHGLYLHRVIRIRRENRHVHRLEQRPP 15
           ++HDHG  H + H DR      +  R  R++R     ++ PP
Sbjct: 720 QSHDHGHSHSKSH-DREKEKEKKKDREHRKHRETEEEDEGPP 760


>SPBC1A4.07c |||U3 snoRNP-associated protein
           Sof1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 436

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +2

Query: 254 SRSLISSSARP*MMRFLRSCLYRNKHVPDSAHVSRH 361
           SR+ I S+     +++L S   R KH+P+   ++RH
Sbjct: 349 SRASIRSTREENRLKYLDSLRERYKHIPEIRRIARH 384


>SPBC18H10.11c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 432

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 17/58 (29%), Positives = 27/58 (46%)
 Frame = -3

Query: 327 LFLYRHDLKNLIIQGRAEEEINDLDSLIGKENK*MLSSLSIFPSRTRRPSLVTGTHSF 154
           L +Y   L+NL+ QG+A E +N +  +          +  I  S  +RP   + T SF
Sbjct: 361 LQVYHEKLRNLVQQGQAAECLNTIKRMSHNGPFPTQQTFLIVLSLCKRPKFYSYTKSF 418


>SPBC17D11.05 |tif32||translation initiation factor
           eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 932

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +2

Query: 236 SLPIKESRSLISSSARP*MMRFLRSCLYRNK 328
           ++ +K SR+    S  P MMRF+  C++  K
Sbjct: 34  TIVLKRSRNAQGFSLEPIMMRFIELCVHLRK 64


>SPBC2D10.11c |||nucleosome assembly protein Nap2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 379

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +1

Query: 181 RPSCSRRKNRQTREHLLVFFTNQRIEIIDFFLGPSLNDE 297
           R    +++NR+T +  LV  T       +FF  P L+D+
Sbjct: 265 RVETKKQRNRKTNQTRLVRTTVPNDSFFNFFSPPQLDDD 303


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,639,707
Number of Sequences: 5004
Number of extensions: 54682
Number of successful extensions: 136
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)