Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0494
(656 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0386 + 33555682-33556344,33557138-33557299 149 2e-36
07_01_0756 + 5819367-5820038,5820847-5821005 144 4e-35
07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871 64 9e-11
03_04_0238 - 19219040-19219218,19220296-19220350,19221606-192216... 47 2e-05
02_02_0591 - 11901947-11901984,11902394-11903786,11903846-11904031 29 2.5
11_04_0439 + 17749634-17749858,17750164-17750301,17750770-177509... 29 3.3
02_04_0238 + 21186072-21186883,21187315-21189346 29 3.3
04_03_1049 + 22015053-22015083,22015770-22015885,22016013-220161... 28 5.7
05_03_0076 + 8164466-8164511,8164643-8164698,8165529-8165867,816... 28 7.5
>03_06_0386 + 33555682-33556344,33557138-33557299
Length = 274
Score = 149 bits (361), Expect = 2e-36
Identities = 70/82 (85%), Positives = 75/82 (91%), Gaps = 1/82 (1%)
Frame = +1
Query: 274 LGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIIL 453
L P L DEV+KI PVQKQTRAGQRTRFKAFV +GDNNGH+GLGVKC+KEVATAIRGAIIL
Sbjct: 81 LVPGLKDEVMKITPVQKQTRAGQRTRFKAFVVVGDNNGHVGLGVKCAKEVATAIRGAIIL 140
Query: 454 AKLSVLPVRRGYWGNKIGS-HT 516
AKLSV+PVRRGYWGNKIG HT
Sbjct: 141 AKLSVVPVRRGYWGNKIGQPHT 162
Score = 88.2 bits (209), Expect = 5e-18
Identities = 37/50 (74%), Positives = 46/50 (92%)
Frame = +3
Query: 507 KPHTVPCKVTGKCGSVTVRLIPAPRCTGIVSAPVPKKLLQMAGVQDCYTS 656
+PHTVPCKVTGKCGSVTVR++PAPR +GIV+A VPKK+LQ AG++D +TS
Sbjct: 159 QPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIEDVFTS 208
Score = 59.7 bits (138), Expect = 2e-09
Identities = 23/37 (62%), Positives = 33/37 (89%)
Frame = +2
Query: 143 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKE 253
++++++WVPVTKLGRLV+EG+ K+E IYL SLP+KE
Sbjct: 38 RQEEEKWVPVTKLGRLVKEGRFSKIEEIYLHSLPVKE 74
>07_01_0756 + 5819367-5820038,5820847-5821005
Length = 276
Score = 144 bits (350), Expect = 4e-35
Identities = 68/82 (82%), Positives = 74/82 (90%), Gaps = 1/82 (1%)
Frame = +1
Query: 274 LGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIIL 453
L P L DEV+KI PVQKQTRAGQRTRFKAFV +GD +GH+GLGVKC+KEVATAIRGAIIL
Sbjct: 84 LVPGLKDEVMKITPVQKQTRAGQRTRFKAFVVVGDGDGHVGLGVKCAKEVATAIRGAIIL 143
Query: 454 AKLSVLPVRRGYWGNKIGS-HT 516
AKLSV+PVRRGYWGNKIG HT
Sbjct: 144 AKLSVVPVRRGYWGNKIGKPHT 165
Score = 89.8 bits (213), Expect = 2e-18
Identities = 38/50 (76%), Positives = 46/50 (92%)
Frame = +3
Query: 507 KPHTVPCKVTGKCGSVTVRLIPAPRCTGIVSAPVPKKLLQMAGVQDCYTS 656
KPHTVPCKVTGKCGSVTVR++PAPR +GIV+A VPKK+LQ AG++D +TS
Sbjct: 162 KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAAHVPKKVLQFAGIEDVFTS 211
Score = 59.7 bits (138), Expect = 2e-09
Identities = 24/37 (64%), Positives = 33/37 (89%)
Frame = +2
Query: 143 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKE 253
++++++WVPVTKLGRLV+E KI K+E IYL SLP+KE
Sbjct: 41 RQEEEKWVPVTKLGRLVKENKIHKIEEIYLHSLPVKE 77
>07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871
Length = 233
Score = 64.1 bits (149), Expect = 9e-11
Identities = 28/51 (54%), Positives = 38/51 (74%)
Frame = +3
Query: 504 RKPHTVPCKVTGKCGSVTVRLIPAPRCTGIVSAPVPKKLLQMAGVQDCYTS 656
RKPHTV CKV K GSVTVR++ P + +V+ VPKK+L+ AG++D +TS
Sbjct: 46 RKPHTVSCKVADKYGSVTVRMMLPPMGSSVVATRVPKKVLKFAGIEDVFTS 96
Score = 41.1 bits (92), Expect = 8e-04
Identities = 20/32 (62%), Positives = 24/32 (75%)
Frame = +1
Query: 361 FVAIGDNNGHIGLGVKCSKEVATAIRGAIILA 456
FV +GD + HI LGVKC+K AT + GAIILA
Sbjct: 2 FVVVGDGDSHIELGVKCAK--ATTMSGAIILA 31
>03_04_0238 -
19219040-19219218,19220296-19220350,19221606-19221690,
19222068-19222798
Length = 349
Score = 46.8 bits (106), Expect = 2e-05
Identities = 21/63 (33%), Positives = 39/63 (61%)
Frame = +1
Query: 289 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSV 468
++ V+++ V K + G++ F+A V +GD GH+G+GV +KEV AI A + + ++
Sbjct: 171 SERVVQVNRVTKVVKGGRQLSFRAIVVVGDMKGHVGVGVGKAKEVTEAITKAAMNGRRNL 230
Query: 469 LPV 477
+ V
Sbjct: 231 VTV 233
>02_02_0591 - 11901947-11901984,11902394-11903786,11903846-11904031
Length = 538
Score = 29.5 bits (63), Expect = 2.5
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = -1
Query: 638 YTSHLKKLLRNWRRHNTSTTRGRNQPDCYGTTLAGDLA 525
Y ++++L+++W H+ R + PD G + DLA
Sbjct: 410 YPINVERLIQHWMAHDFIPAREEDNPDMVGKEIFNDLA 447
>11_04_0439 +
17749634-17749858,17750164-17750301,17750770-17750943,
17751099-17751184,17751264-17751525,17751616-17751815,
17753631-17754086,17754198-17754474,17754694-17754828,
17754946-17755026,17756305-17756400,17756676-17756771,
17756844-17756900,17756975-17757043,17757158-17757237,
17758185-17758329,17758422-17758511,17758914-17758994,
17759103-17759198,17759279-17759335,17759417-17759461,
17759547-17759612,17760304-17760350,17762771-17762865,
17763375-17763393,17763438-17763498,17763637-17763660
Length = 1085
Score = 29.1 bits (62), Expect = 3.3
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = -3
Query: 423 DFLAALHTQTNMTVVVANGNKCLETCALSGTCLFLYRHD 307
+F+A LHT +M V +E C LS F+ +HD
Sbjct: 655 EFIAYLHTYVDMLHKVDEIGDTMEDCYLSSPIKFVSKHD 693
>02_04_0238 + 21186072-21186883,21187315-21189346
Length = 947
Score = 29.1 bits (62), Expect = 3.3
Identities = 20/57 (35%), Positives = 28/57 (49%)
Frame = +2
Query: 146 EDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKESRSLISSSARP*MMRFLRSCL 316
E Q + VP+ G L GK +Y I ESR+ ++ S +P MM+ LR L
Sbjct: 189 EQQLKVVPIVGSGGL---GKTTLANQVYHNLEGIFESRAFVTVSQKPDMMKILREIL 242
>04_03_1049 + 22015053-22015083,22015770-22015885,22016013-22016108,
22016229-22016285,22016468-22016620,22016754-22016838,
22017097-22017187,22017324-22017488,22017813-22017932,
22018020-22018104,22018234-22018402,22019055-22019173,
22019250-22019440,22019746-22019957,22020905-22021500,
22022538-22022658,22023439-22023868,22024412-22024797,
22024976-22025071,22025380-22025432,22026915-22027061,
22027139-22027309,22027880-22027962,22028049-22028247,
22028668-22028789,22029752-22029818,22029960-22030010,
22030768-22031001,22031263-22031451,22032455-22032646,
22032742-22032936
Length = 1673
Score = 28.3 bits (60), Expect = 5.7
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -1
Query: 98 DRHGLYLHRVIRIRRENRHVHRLEQRPP 15
D HGL+ + + RH+HR+E +PP
Sbjct: 1006 DMHGLHASEAVEVLE--RHLHRIEFQPP 1031
>05_03_0076 + 8164466-8164511,8164643-8164698,8165529-8165867,
8165938-8166012,8166674-8166846,8168697-8168795,
8169002-8169161,8169321-8169464,8169551-8169723,
8169796-8169991,8170061-8170258,8170864-8171016,
8171838-8171959,8172037-8172136,8172221-8172316,
8172400-8172530,8173717-8173819,8174373-8174555,
8174632-8174724,8174818-8174853,8175672-8175773,
8176310-8176472,8176557-8176678,8176994-8177158,
8177667-8177849,8178679-8178831,8179136-8179288,
8179373-8179444,8179530-8179664,8179739-8179800,
8179999-8180096,8180628-8180737,8180832-8181005,
8181092-8181157,8181847-8181915,8181989-8182099,
8182418-8182558,8182638-8182766,8182864-8183029,
8183174-8183388,8184883-8185089,8185501-8185572,
8185897-8186010,8186090-8186281,8186489-8186569,
8186654-8186728,8186812-8186878,8187292-8187452,
8187943-8188116,8188209-8188337,8188421-8188504,
8188589-8188650,8188728-8188800,8189008-8189142,
8189790-8189960,8190054-8190319,8190440-8190458
Length = 2448
Score = 27.9 bits (59), Expect = 7.5
Identities = 21/94 (22%), Positives = 41/94 (43%), Gaps = 3/94 (3%)
Frame = -1
Query: 275 RKKSMISIL*LVKKTSKCSR---VCRFFLREQDGRVW*QEPTLSGLPCRAHDHGRDHDRV 105
R+++++++ L+ C +C R D ++ L C AH G D
Sbjct: 1006 RRRAIVTLTKLIPTVQLCITRLLICLSVARNNDDL---RKDAAEALCCLAHALGEDFTIF 1062
Query: 104 HEDRHGLYLHRVIRIRRENRHVHRLEQRPPLLND 3
H L + +R R+ + +RL +R PL+++
Sbjct: 1063 VSSIHKLLVKHHMRYRKWDEIENRLLRREPLISE 1096
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,346,430
Number of Sequences: 37544
Number of extensions: 410221
Number of successful extensions: 1199
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1197
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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