Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0494
(656 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_4413| Best HMM Match : No HMM Matches (HMM E-Value=.) 171 3e-43
SB_53557| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.36
SB_42238| Best HMM Match : Trypsin (HMM E-Value=0) 32 0.36
SB_23120| Best HMM Match : Mucin (HMM E-Value=0.033) 30 1.4
SB_53780| Best HMM Match : RVT_1 (HMM E-Value=0.0007) 29 2.5
SB_11456| Best HMM Match : 7tm_1 (HMM E-Value=3.5e-40) 29 2.5
SB_20635| Best HMM Match : rve (HMM E-Value=0.91) 29 3.3
SB_5251| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_54962| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_52533| Best HMM Match : rve (HMM E-Value=2) 29 3.3
SB_25521| Best HMM Match : NLPC_P60 (HMM E-Value=5.7) 29 3.3
SB_993| Best HMM Match : rve (HMM E-Value=2.7e-33) 29 3.3
SB_3188| Best HMM Match : Hyd_WA (HMM E-Value=2e-13) 29 4.4
SB_32523| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-17) 28 5.8
SB_32282| Best HMM Match : Laminin_G_2 (HMM E-Value=0) 28 5.8
SB_22198| Best HMM Match : Borrelia_orfA (HMM E-Value=5.4) 28 5.8
SB_8063| Best HMM Match : Homeobox (HMM E-Value=8.5e-24) 28 7.7
SB_6385| Best HMM Match : Peptidase_A16_N (HMM E-Value=0.00099) 28 7.7
>SB_4413| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 252
Score = 171 bits (417), Expect = 3e-43
Identities = 84/104 (80%), Positives = 92/104 (88%), Gaps = 2/104 (1%)
Frame = +1
Query: 211 QTREHLLVF-FTNQRIEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNG 387
+T EH+ +F + EIIDFFLG +L DEVLKIMPVQKQTRAGQRTRFKAFVAIGD+NG
Sbjct: 24 KTLEHIYLFSLPIKEFEIIDFFLGAALKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDSNG 83
Query: 388 HIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIGS-HT 516
H+GLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNKIG HT
Sbjct: 84 HVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGKPHT 127
Score = 102 bits (244), Expect = 3e-22
Identities = 45/50 (90%), Positives = 47/50 (94%)
Frame = +3
Query: 507 KPHTVPCKVTGKCGSVTVRLIPAPRCTGIVSAPVPKKLLQMAGVQDCYTS 656
KPHTVPCKVTGKCGS VRLIPAPR TGIVSAPVPKKLLQMAG++DCYTS
Sbjct: 124 KPHTVPCKVTGKCGSTRVRLIPAPRGTGIVSAPVPKKLLQMAGIEDCYTS 173
Score = 54.0 bits (124), Expect = 1e-07
Identities = 25/31 (80%), Positives = 27/31 (87%)
Frame = +2
Query: 161 WVPVTKLGRLVREGKIDKLESIYLFSLPIKE 253
WVPVTKLGRLV++ KI LE IYLFSLPIKE
Sbjct: 8 WVPVTKLGRLVKDLKIKTLEHIYLFSLPIKE 38
>SB_53557| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1049
Score = 32.3 bits (70), Expect = 0.36
Identities = 20/66 (30%), Positives = 32/66 (48%)
Frame = -3
Query: 462 QLSKDNSASNGSGDFLAALHTQTNMTVVVANGNKCLETCALSGTCLFLYRHDLKNLIIQG 283
++ + NS N D TNMT + + G CL + TC+ L DL NL+ +
Sbjct: 235 RILRRNSQPNDQADVARLQSLITNMTEIYSTGKVCL-NITRNNTCMSL-DPDLGNLMSRS 292
Query: 282 RAEEEI 265
R ++E+
Sbjct: 293 RNQDEL 298
>SB_42238| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 657
Score = 32.3 bits (70), Expect = 0.36
Identities = 20/66 (30%), Positives = 32/66 (48%)
Frame = -3
Query: 462 QLSKDNSASNGSGDFLAALHTQTNMTVVVANGNKCLETCALSGTCLFLYRHDLKNLIIQG 283
++ + NS N D TNMT + + G CL + TC+ L DL NL+ +
Sbjct: 519 RILRRNSQPNDQADVARLQSLITNMTEIYSTGKVCL-NITRNNTCMSL-DPDLGNLMSRS 576
Query: 282 RAEEEI 265
R ++E+
Sbjct: 577 RNQDEL 582
>SB_23120| Best HMM Match : Mucin (HMM E-Value=0.033)
Length = 382
Score = 30.3 bits (65), Expect = 1.4
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = -1
Query: 185 GRVW*QEPTLSGLPCRAHDHGRDHDRVHEDRHGLYLH 75
G +W + L LP H DHDR H RH +H
Sbjct: 103 GFLWQKNGVLLSLPPPQFRHSHDHDRHHYHRHHNNIH 139
>SB_53780| Best HMM Match : RVT_1 (HMM E-Value=0.0007)
Length = 280
Score = 29.5 bits (63), Expect = 2.5
Identities = 19/44 (43%), Positives = 23/44 (52%)
Frame = -3
Query: 435 NGSGDFLAALHTQTNMTVVVANGNKCLETCALSGTCLFLYRHDL 304
N G LA + N+ +V NG K + C LS T L LY HDL
Sbjct: 108 NAYGKSLAEFYNSNNL--IVLNGVK--QGCMLSPTLLNLYVHDL 147
>SB_11456| Best HMM Match : 7tm_1 (HMM E-Value=3.5e-40)
Length = 391
Score = 29.5 bits (63), Expect = 2.5
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = -2
Query: 610 GTGADTIPVQRG-AGISRTVTEPHLPVTLQGTVCGFLSCY 494
GT T+P G A ++ + E + TL TV GF++C+
Sbjct: 228 GTSGSTLPSNEGRANLTVNIEEVKVTKTLFATVVGFVTCW 267
>SB_20635| Best HMM Match : rve (HMM E-Value=0.91)
Length = 748
Score = 29.1 bits (62), Expect = 3.3
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +1
Query: 289 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLG 402
N +LK++ + Q +A + F+ FVA + H G G
Sbjct: 155 NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 192
>SB_5251| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 945
Score = 29.1 bits (62), Expect = 3.3
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +1
Query: 289 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLG 402
N +LK++ + Q +A + F+ FVA + H G G
Sbjct: 811 NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 848
>SB_54962| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2211
Score = 29.1 bits (62), Expect = 3.3
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +1
Query: 289 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLG 402
N +LK++ + Q +A + F+ FVA + H G G
Sbjct: 2008 NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 2045
>SB_52533| Best HMM Match : rve (HMM E-Value=2)
Length = 212
Score = 29.1 bits (62), Expect = 3.3
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +1
Query: 289 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLG 402
N +LK++ + Q +A + F+ FVA + H G G
Sbjct: 95 NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 132
>SB_25521| Best HMM Match : NLPC_P60 (HMM E-Value=5.7)
Length = 212
Score = 29.1 bits (62), Expect = 3.3
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +1
Query: 289 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLG 402
N +LK++ + Q +A + F+ FVA + H G G
Sbjct: 9 NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 46
>SB_993| Best HMM Match : rve (HMM E-Value=2.7e-33)
Length = 735
Score = 29.1 bits (62), Expect = 3.3
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +1
Query: 289 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLG 402
N +LK++ + Q +A + F+ FVA + H G G
Sbjct: 532 NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 569
>SB_3188| Best HMM Match : Hyd_WA (HMM E-Value=2e-13)
Length = 1389
Score = 28.7 bits (61), Expect = 4.4
Identities = 12/26 (46%), Positives = 13/26 (50%)
Frame = +3
Query: 564 LIPAPRCTGIVSAPVPKKLLQMAGVQ 641
L P P CTG P PKKL+ Q
Sbjct: 1355 LTPQPACTGFGKYPQPKKLINAKSTQ 1380
>SB_32523| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-17)
Length = 1130
Score = 28.3 bits (60), Expect = 5.8
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = +3
Query: 339 TAHTFQGICCHWRQQRSYW 395
TA + ICCH +Q + +W
Sbjct: 486 TADQYDAICCHTQQSKKFW 504
>SB_32282| Best HMM Match : Laminin_G_2 (HMM E-Value=0)
Length = 897
Score = 28.3 bits (60), Expect = 5.8
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = +1
Query: 337 GQRTRFKAFVAIGDNNGHIGLGVKCSKEVA 426
G++ + K F+A+G NGH+ C ++A
Sbjct: 356 GRKDKRKDFLALGLRNGHVEFRFSCGADIA 385
>SB_22198| Best HMM Match : Borrelia_orfA (HMM E-Value=5.4)
Length = 394
Score = 28.3 bits (60), Expect = 5.8
Identities = 17/50 (34%), Positives = 26/50 (52%)
Frame = -1
Query: 644 ILYTSHLKKLLRNWRRHNTSTTRGRNQPDCYGTTLAGDLARDGVWLPILL 495
++YT + + RN++ +NT T R Q + TT+ L D L ILL
Sbjct: 191 LVYTRNSTQTARNYQYYNTRKTL-RRQRETINTTIHAKLYTDSEKLSILL 239
Score = 27.9 bits (59), Expect = 7.7
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = -1
Query: 644 ILYTSHLKKLLRNWRRHNTSTTRGRNQPDCYGTTLAGDLARDGVWLPILL 495
+LYT + + RN++ +NT T Q + TT+ L D L ILL
Sbjct: 238 LLYTRNSTRTARNYQYYNTRETL-HGQRETINTTIHAKLYTDSEKLSILL 286
>SB_8063| Best HMM Match : Homeobox (HMM E-Value=8.5e-24)
Length = 963
Score = 27.9 bits (59), Expect = 7.7
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = -1
Query: 464 DSLARIIAPRMAVATSLLHFTPKPI*PLLSPMATNALKRVRCPA 333
D+L+ IAP A SLL + P+++P A +AL ++ P+
Sbjct: 365 DALSLQIAPSANNALSLLKGAYDALSPMIAPSANDALSLLKAPS 408
>SB_6385| Best HMM Match : Peptidase_A16_N (HMM E-Value=0.00099)
Length = 437
Score = 27.9 bits (59), Expect = 7.7
Identities = 20/72 (27%), Positives = 35/72 (48%)
Frame = +1
Query: 160 VGSCHQTRPSCSRRKNRQTREHLLVFFTNQRIEIIDFFLGPSLNDEVLKIMPVQKQTRAG 339
+G+ + P S+RK ++ + + T +RI GP D+ + + +K+TRAG
Sbjct: 14 LGAHGEVGPCASKRKRKKVSKE--IDCTGKRISTT---FGPIEPDKRMATVASKKKTRAG 68
Query: 340 QRTRFKAFVAIG 375
R F+A G
Sbjct: 69 HRAFVTRFMAEG 80
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,090,611
Number of Sequences: 59808
Number of extensions: 465461
Number of successful extensions: 1349
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1346
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -