Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0494
         (656 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42436-10|AAF99899.1|  272|Caenorhabditis elegans Ribosomal prot...   141   3e-34
U80447-10|AAB37814.1|  477|Caenorhabditis elegans Hypothetical p...    29   2.9  
Z74041-9|CAA98523.2|  801|Caenorhabditis elegans Hypothetical pr...    29   3.8  
Z74035-5|CAA98485.2|  801|Caenorhabditis elegans Hypothetical pr...    29   3.8  
U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical pr...    28   6.7  

>U42436-10|AAF99899.1|  272|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 2 protein.
          Length = 272

 Score =  141 bits (342), Expect = 3e-34
 Identities = 71/91 (78%), Positives = 78/91 (85%), Gaps = 1/91 (1%)
 Frame = +1

Query: 247 QRIEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVA 426
           +  EIID  L  +L DEVLKI PVQKQT AGQRTRFKAFVAIGD+ GH+GLGVKCSKEVA
Sbjct: 86  KEFEIIDA-LCSNLKDEVLKISPVQKQTTAGQRTRFKAFVAIGDHAGHVGLGVKCSKEVA 144

Query: 427 TAIRGAIILAKLSVLPVRRGYWGNKIG-SHT 516
           TAIRGAI+ AKL+V+PVRRGYWGNKIG  HT
Sbjct: 145 TAIRGAIVAAKLAVVPVRRGYWGNKIGLPHT 175



 Score = 96.3 bits (229), Expect = 2e-20
 Identities = 42/49 (85%), Positives = 45/49 (91%)
 Frame = +3

Query: 510 PHTVPCKVTGKCGSVTVRLIPAPRCTGIVSAPVPKKLLQMAGVQDCYTS 656
           PHTVPCKVTGKC SV VRLIPAPR TGIVSAPVPKKLL MAG++DCYT+
Sbjct: 173 PHTVPCKVTGKCASVMVRLIPAPRGTGIVSAPVPKKLLHMAGIEDCYTA 221



 Score = 55.2 bits (127), Expect = 4e-08
 Identities = 26/36 (72%), Positives = 28/36 (77%)
 Frame = +2

Query: 146 EDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKE 253
           E + EW PVTKLGRLV+E KI  LE IYL SLPIKE
Sbjct: 52  EKETEWTPVTKLGRLVKEKKITTLEEIYLNSLPIKE 87


>U80447-10|AAB37814.1|  477|Caenorhabditis elegans Hypothetical
           protein F55F8.9 protein.
          Length = 477

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = -1

Query: 632 SHLKKLLRNWRRHNTSTTRGRNQPDCYGTTLAGDL 528
           +H K + +N RR+    +R +N+   YG+TL GDL
Sbjct: 218 THKKIVFKN-RRYGRRISRNQNRFSSYGSTLNGDL 251


>Z74041-9|CAA98523.2|  801|Caenorhabditis elegans Hypothetical
           protein F47G9.3 protein.
          Length = 801

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -3

Query: 366 NKCLETCALSGTCLFLYR-HDLKNLIIQGR 280
           ++CLE C +S  C F Y+  D+ N +I  R
Sbjct: 286 SECLEKCTMSEECRFAYQSKDMNNCLISRR 315


>Z74035-5|CAA98485.2|  801|Caenorhabditis elegans Hypothetical
           protein F47G9.3 protein.
          Length = 801

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -3

Query: 366 NKCLETCALSGTCLFLYR-HDLKNLIIQGR 280
           ++CLE C +S  C F Y+  D+ N +I  R
Sbjct: 286 SECLEKCTMSEECRFAYQSKDMNNCLISRR 315


>U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical protein
            C41A3.1 protein.
          Length = 7829

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = -1

Query: 311  MILRTSSFRDGPRKKSMISIL*LVKKTSKCSRVCRFFLREQDG 183
            +I+    F +G  +   +S+L LVK  SK    CRF + ++ G
Sbjct: 3118 IIIDLKGFHEGSTETLYMSLLNLVKSISKLEIQCRFGVSQEFG 3160


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,049,014
Number of Sequences: 27780
Number of extensions: 329629
Number of successful extensions: 906
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 854
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 904
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)