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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0494
         (656 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S ri...   160   6e-40
At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C)             160   9e-40
At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) simila...   159   2e-39
At1g58983.1 68414.m06666 40S ribosomal protein S2, putative simi...   159   2e-39
At1g58684.1 68414.m06657 40S ribosomal protein S2, putative           159   2e-39
At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) simila...   159   2e-39
At2g33800.1 68415.m04147 ribosomal protein S5 family protein con...    47   1e-05
At1g80480.1 68414.m09427 PRLI-interacting factor L, putative sim...    29   2.7  
At5g01770.1 68418.m00096 transducin family protein / WD-40 repea...    29   3.6  
At3g18530.1 68416.m02357 expressed protein similar to unknown pr...    29   3.6  
At3g01450.1 68416.m00069 expressed protein                             29   3.6  
At5g59520.1 68418.m07459 zinc transporter (ZIP2) identical to zi...    28   4.8  
At4g03740.1 68417.m00513 hypothetical protein                          28   6.3  
At3g63100.1 68416.m07087 glycine-rich protein                          28   6.3  
At3g61940.1 68416.m06956 zinc transporter, putative similar to z...    28   6.3  
At2g04050.1 68415.m00386 MATE efflux family protein similar to r...    28   6.3  

>At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S
           ribosomal protein S2 - Arabidopsis thaliana,
           SWISSPROT:RS2_ARATH
          Length = 276

 Score =  160 bits (389), Expect = 6e-40
 Identities = 73/88 (82%), Positives = 82/88 (93%), Gaps = 1/88 (1%)
 Frame = +1

Query: 256 EIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAI 435
           +IID  +GPSL DEV+KIMPVQKQTRAGQRTRFKAF+ +GD+NGH+GLGVKCSKEVATAI
Sbjct: 77  QIIDLLVGPSLKDEVMKIMPVQKQTRAGQRTRFKAFIVVGDSNGHVGLGVKCSKEVATAI 136

Query: 436 RGAIILAKLSVLPVRRGYWGNKIGS-HT 516
           RGAIILAKLSV+P+RRGYWGNKIG  HT
Sbjct: 137 RGAIILAKLSVVPIRRGYWGNKIGKPHT 164



 Score = 89.0 bits (211), Expect = 2e-18
 Identities = 38/50 (76%), Positives = 45/50 (90%)
 Frame = +3

Query: 507 KPHTVPCKVTGKCGSVTVRLIPAPRCTGIVSAPVPKKLLQMAGVQDCYTS 656
           KPHTVPCKVTGKCGSVTVR++PAPR +GIV+A VPKK+LQ AG+ D +TS
Sbjct: 161 KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTS 210



 Score = 60.5 bits (140), Expect = 1e-09
 Identities = 25/35 (71%), Positives = 32/35 (91%)
 Frame = +2

Query: 149 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKE 253
           ++++WVPVTKLGRLV+EGKI K+E IYL SLP+KE
Sbjct: 41  EEEKWVPVTKLGRLVKEGKITKIEQIYLHSLPVKE 75


>At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C)
          Length = 285

 Score =  160 bits (388), Expect = 9e-40
 Identities = 74/88 (84%), Positives = 81/88 (92%), Gaps = 1/88 (1%)
 Frame = +1

Query: 256 EIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAI 435
           +IID  +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSKEVATAI
Sbjct: 86  QIIDMLIGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAI 145

Query: 436 RGAIILAKLSVLPVRRGYWGNKIGS-HT 516
           RGAIILAKLSV+PVRRGYWGNKIG  HT
Sbjct: 146 RGAIILAKLSVVPVRRGYWGNKIGKPHT 173



 Score = 89.0 bits (211), Expect = 2e-18
 Identities = 38/50 (76%), Positives = 45/50 (90%)
 Frame = +3

Query: 507 KPHTVPCKVTGKCGSVTVRLIPAPRCTGIVSAPVPKKLLQMAGVQDCYTS 656
           KPHTVPCKVTGKCGSVTVR++PAPR +GIV+A VPKK+LQ AG+ D +TS
Sbjct: 170 KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTS 219



 Score = 52.8 bits (121), Expect = 2e-07
 Identities = 22/35 (62%), Positives = 29/35 (82%)
 Frame = +2

Query: 149 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKE 253
           ++++WVPVTKLGRLV  G I ++E IYL SLP+KE
Sbjct: 50  EEEKWVPVTKLGRLVAAGHIKQIEQIYLHSLPVKE 84


>At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) similar
           to ribosomal protein S2 GI:430711 from [Drosophila
           melanogaster]
          Length = 284

 Score =  159 bits (386), Expect = 2e-39
 Identities = 74/88 (84%), Positives = 81/88 (92%), Gaps = 1/88 (1%)
 Frame = +1

Query: 256 EIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAI 435
           +IID  +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSKEVATAI
Sbjct: 85  QIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAI 144

Query: 436 RGAIILAKLSVLPVRRGYWGNKIGS-HT 516
           RGAIILAKLSV+PVRRGYWGNKIG  HT
Sbjct: 145 RGAIILAKLSVVPVRRGYWGNKIGKPHT 172



 Score = 89.0 bits (211), Expect = 2e-18
 Identities = 38/50 (76%), Positives = 45/50 (90%)
 Frame = +3

Query: 507 KPHTVPCKVTGKCGSVTVRLIPAPRCTGIVSAPVPKKLLQMAGVQDCYTS 656
           KPHTVPCKVTGKCGSVTVR++PAPR +GIV+A VPKK+LQ AG+ D +TS
Sbjct: 169 KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTS 218



 Score = 55.6 bits (128), Expect = 3e-08
 Identities = 24/35 (68%), Positives = 29/35 (82%)
 Frame = +2

Query: 149 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKE 253
           ++ +WVPVTKLGRLV + KI KLE IYL SLP+KE
Sbjct: 49  EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKE 83


>At1g58983.1 68414.m06666 40S ribosomal protein S2, putative similar
           to ribosomal protein S2 GI:939717 from [Urechis caupo]
          Length = 284

 Score =  159 bits (386), Expect = 2e-39
 Identities = 74/88 (84%), Positives = 81/88 (92%), Gaps = 1/88 (1%)
 Frame = +1

Query: 256 EIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAI 435
           +IID  +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSKEVATAI
Sbjct: 85  QIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAI 144

Query: 436 RGAIILAKLSVLPVRRGYWGNKIGS-HT 516
           RGAIILAKLSV+PVRRGYWGNKIG  HT
Sbjct: 145 RGAIILAKLSVVPVRRGYWGNKIGKPHT 172



 Score = 89.0 bits (211), Expect = 2e-18
 Identities = 38/50 (76%), Positives = 45/50 (90%)
 Frame = +3

Query: 507 KPHTVPCKVTGKCGSVTVRLIPAPRCTGIVSAPVPKKLLQMAGVQDCYTS 656
           KPHTVPCKVTGKCGSVTVR++PAPR +GIV+A VPKK+LQ AG+ D +TS
Sbjct: 169 KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTS 218



 Score = 55.6 bits (128), Expect = 3e-08
 Identities = 24/35 (68%), Positives = 29/35 (82%)
 Frame = +2

Query: 149 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKE 253
           ++ +WVPVTKLGRLV + KI KLE IYL SLP+KE
Sbjct: 49  EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKE 83


>At1g58684.1 68414.m06657 40S ribosomal protein S2, putative 
          Length = 284

 Score =  159 bits (386), Expect = 2e-39
 Identities = 74/88 (84%), Positives = 81/88 (92%), Gaps = 1/88 (1%)
 Frame = +1

Query: 256 EIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAI 435
           +IID  +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSKEVATAI
Sbjct: 85  QIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAI 144

Query: 436 RGAIILAKLSVLPVRRGYWGNKIGS-HT 516
           RGAIILAKLSV+PVRRGYWGNKIG  HT
Sbjct: 145 RGAIILAKLSVVPVRRGYWGNKIGKPHT 172



 Score = 89.0 bits (211), Expect = 2e-18
 Identities = 38/50 (76%), Positives = 45/50 (90%)
 Frame = +3

Query: 507 KPHTVPCKVTGKCGSVTVRLIPAPRCTGIVSAPVPKKLLQMAGVQDCYTS 656
           KPHTVPCKVTGKCGSVTVR++PAPR +GIV+A VPKK+LQ AG+ D +TS
Sbjct: 169 KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTS 218



 Score = 55.6 bits (128), Expect = 3e-08
 Identities = 24/35 (68%), Positives = 29/35 (82%)
 Frame = +2

Query: 149 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKE 253
           ++ +WVPVTKLGRLV + KI KLE IYL SLP+KE
Sbjct: 49  EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKE 83


>At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) similar
           to ribosomal protein S2 GI:939717 from (Urechis caupo)
          Length = 284

 Score =  159 bits (386), Expect = 2e-39
 Identities = 74/88 (84%), Positives = 81/88 (92%), Gaps = 1/88 (1%)
 Frame = +1

Query: 256 EIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAI 435
           +IID  +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSKEVATAI
Sbjct: 85  QIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAI 144

Query: 436 RGAIILAKLSVLPVRRGYWGNKIGS-HT 516
           RGAIILAKLSV+PVRRGYWGNKIG  HT
Sbjct: 145 RGAIILAKLSVVPVRRGYWGNKIGKPHT 172



 Score = 89.0 bits (211), Expect = 2e-18
 Identities = 38/50 (76%), Positives = 45/50 (90%)
 Frame = +3

Query: 507 KPHTVPCKVTGKCGSVTVRLIPAPRCTGIVSAPVPKKLLQMAGVQDCYTS 656
           KPHTVPCKVTGKCGSVTVR++PAPR +GIV+A VPKK+LQ AG+ D +TS
Sbjct: 169 KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTS 218



 Score = 55.6 bits (128), Expect = 3e-08
 Identities = 24/35 (68%), Positives = 29/35 (82%)
 Frame = +2

Query: 149 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKE 253
           ++ +WVPVTKLGRLV + KI KLE IYL SLP+KE
Sbjct: 49  EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKE 83


>At2g33800.1 68415.m04147 ribosomal protein S5 family protein
           contains Pfam profiles PF03719: Ribosomal protein S5,
           C-terminal domain, PF00333: Ribosomal protein S5,
           N-terminal domain
          Length = 303

 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 19/62 (30%), Positives = 40/62 (64%)
 Frame = +1

Query: 292 DEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVL 471
           + V+++  V K  + G++ +F+A V +GD  G++G+G   +KEV  A++ + I A+ +++
Sbjct: 149 ERVVQVRRVTKVVKGGKQLKFRAIVVVGDKQGNVGVGCAKAKEVVAAVQKSAIDARRNIV 208

Query: 472 PV 477
            V
Sbjct: 209 QV 210



 Score = 31.5 bits (68), Expect = 0.51
 Identities = 16/46 (34%), Positives = 26/46 (56%)
 Frame = +3

Query: 507 KPHTVPCKVTGKCGSVTVRLIPAPRCTGIVSAPVPKKLLQMAGVQD 644
           K  T P +  G  G+  V L PA   TG+++    + +L+MAGV++
Sbjct: 214 KYSTFPHRSEGDYGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVEN 259


>At1g80480.1 68414.m09427 PRLI-interacting factor L, putative
           similar to PRLI-interacting factor L [Arabidopsis
           thaliana] GI:11139268; contains Pfam profile PF02492:
           Cobalamin synthesis protein/P47K
          Length = 444

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = -1

Query: 134 HDHGRDHDRVHEDRHGLYLH 75
           HDH  DHD  H D H  + H
Sbjct: 320 HDHNHDHDHHHHDGHDHHHH 339


>At5g01770.1 68418.m00096 transducin family protein / WD-40 repeat
           family protein similar to WD-repeat protein mip1
           (SP:P87141) [Schizosaccharomyces pombe]
          Length = 1354

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -2

Query: 541 LPVTLQGTVCGFLSCYPSNLF 479
           LP+ LQG + GF+   PSN++
Sbjct: 429 LPIVLQGAITGFILPLPSNIY 449


>At3g18530.1 68416.m02357 expressed protein similar to unknown
           protein GB:AAF24615 from [Arabidopsis thaliana]
          Length = 297

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 22/72 (30%), Positives = 32/72 (44%)
 Frame = -1

Query: 500 LLPQ*PLRTGRTDSLARIIAPRMAVATSLLHFTPKPI*PLLSPMATNALKRVRCPARVCF 321
           LL Q  L++ +        A R  VA +  H +P  + P L P   N   R+R  A  CF
Sbjct: 166 LLTQLLLKSSQDKRFVCEAAERALVAMTT-HVSPALLLPKLRPCLKNKSPRIRAKASACF 224

Query: 320 CTGMILRTSSFR 285
            +G + R  + R
Sbjct: 225 -SGCVPRLEAAR 235


>At3g01450.1 68416.m00069 expressed protein
          Length = 326

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 19/63 (30%), Positives = 28/63 (44%)
 Frame = -1

Query: 509 LPILLPQ*PLRTGRTDSLARIIAPRMAVATSLLHFTPKPI*PLLSPMATNALKRVRCPAR 330
           L +LL Q  L++ +        A +  VA +  H +P  + P L P   N   R+R  A 
Sbjct: 163 LDLLLTQLLLKSSQDKRFVCEAAEKALVAMTA-HVSPALLLPKLQPFLKNRNPRIRAKAS 221

Query: 329 VCF 321
            CF
Sbjct: 222 TCF 224


>At5g59520.1 68418.m07459 zinc transporter (ZIP2) identical to zinc
           transporter ZIP2 [Arabidopsis thaliana]
           gi|3252868|gb|AAC24198; member of the Zinc (Zn2+)-Iron
           (Fe2+) permease (ZIP) family, PMID:11500563
          Length = 353

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +1

Query: 358 AFVAIGDNNGHIGLGVKCSKE 420
           AFVA G NN H+G  V  S+E
Sbjct: 149 AFVAAGSNNNHVGASVGESRE 169


>At4g03740.1 68417.m00513 hypothetical protein 
          Length = 345

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +2

Query: 527 QGHRQVWFRNSPADSCPSLYWYC 595
           + ++++WFR     SCP   W C
Sbjct: 60  RNNQEIWFRTFALGSCPHTLWPC 82


>At3g63100.1 68416.m07087 glycine-rich protein 
          Length = 199

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 16/35 (45%), Positives = 17/35 (48%), Gaps = 4/35 (11%)
 Frame = -1

Query: 128 HGRDH----DRVHEDRHGLYLHRVIRIRRENRHVH 36
           HGRDH    DR H   HG + HR  R  R   H H
Sbjct: 109 HGRDHRHGRDRGHHRGHGHHHHRGHRRGRGRGHGH 143


>At3g61940.1 68416.m06956 zinc transporter, putative similar to zinc
           transporter ZAT [Arabidopsis thaliana]
           gi|4206640|gb|AAD11757; similar to zinc transporter
           ZnT-2 [Rattus norvegicus] gi|1256378|gb|AAB02775; member
           of the cation diffusion facilitator (CDF) family, or
           cation efflux (CE) family, PMID:11500563
          Length = 334

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
 Frame = -1

Query: 134 HDHGRDHDRVHEDRHG-LYLHRVIRIRRENRHVHRL 30
           HDHG  HD  H   HG  Y  R  ++  +++ +  +
Sbjct: 158 HDHGHGHDHGHSHDHGHSYGERAEQLLEKSKEIRNI 193


>At2g04050.1 68415.m00386 MATE efflux family protein similar to
           ripening regulated protein DDTFR18 [Lycopersicon
           esculentum] GI:12231296; contains Pfam profile: PF01554
           uncharacterized membrane protein family
          Length = 476

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 12/18 (66%), Positives = 12/18 (66%)
 Frame = +3

Query: 513 HTVPCKVTGKCGSVTVRL 566
           H VPCK T K G VTV L
Sbjct: 11  HLVPCKDTWKSGQVTVEL 28


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,274,473
Number of Sequences: 28952
Number of extensions: 312493
Number of successful extensions: 861
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 802
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 857
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1373722560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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