BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e40h0494 (656 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S ri... 160 6e-40 At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C) 160 9e-40 At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) simila... 159 2e-39 At1g58983.1 68414.m06666 40S ribosomal protein S2, putative simi... 159 2e-39 At1g58684.1 68414.m06657 40S ribosomal protein S2, putative 159 2e-39 At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) simila... 159 2e-39 At2g33800.1 68415.m04147 ribosomal protein S5 family protein con... 47 1e-05 At1g80480.1 68414.m09427 PRLI-interacting factor L, putative sim... 29 2.7 At5g01770.1 68418.m00096 transducin family protein / WD-40 repea... 29 3.6 At3g18530.1 68416.m02357 expressed protein similar to unknown pr... 29 3.6 At3g01450.1 68416.m00069 expressed protein 29 3.6 At5g59520.1 68418.m07459 zinc transporter (ZIP2) identical to zi... 28 4.8 At4g03740.1 68417.m00513 hypothetical protein 28 6.3 At3g63100.1 68416.m07087 glycine-rich protein 28 6.3 At3g61940.1 68416.m06956 zinc transporter, putative similar to z... 28 6.3 At2g04050.1 68415.m00386 MATE efflux family protein similar to r... 28 6.3 >At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S ribosomal protein S2 - Arabidopsis thaliana, SWISSPROT:RS2_ARATH Length = 276 Score = 160 bits (389), Expect = 6e-40 Identities = 73/88 (82%), Positives = 82/88 (93%), Gaps = 1/88 (1%) Frame = +1 Query: 256 EIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAI 435 +IID +GPSL DEV+KIMPVQKQTRAGQRTRFKAF+ +GD+NGH+GLGVKCSKEVATAI Sbjct: 77 QIIDLLVGPSLKDEVMKIMPVQKQTRAGQRTRFKAFIVVGDSNGHVGLGVKCSKEVATAI 136 Query: 436 RGAIILAKLSVLPVRRGYWGNKIGS-HT 516 RGAIILAKLSV+P+RRGYWGNKIG HT Sbjct: 137 RGAIILAKLSVVPIRRGYWGNKIGKPHT 164 Score = 89.0 bits (211), Expect = 2e-18 Identities = 38/50 (76%), Positives = 45/50 (90%) Frame = +3 Query: 507 KPHTVPCKVTGKCGSVTVRLIPAPRCTGIVSAPVPKKLLQMAGVQDCYTS 656 KPHTVPCKVTGKCGSVTVR++PAPR +GIV+A VPKK+LQ AG+ D +TS Sbjct: 161 KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTS 210 Score = 60.5 bits (140), Expect = 1e-09 Identities = 25/35 (71%), Positives = 32/35 (91%) Frame = +2 Query: 149 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKE 253 ++++WVPVTKLGRLV+EGKI K+E IYL SLP+KE Sbjct: 41 EEEKWVPVTKLGRLVKEGKITKIEQIYLHSLPVKE 75 >At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C) Length = 285 Score = 160 bits (388), Expect = 9e-40 Identities = 74/88 (84%), Positives = 81/88 (92%), Gaps = 1/88 (1%) Frame = +1 Query: 256 EIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAI 435 +IID +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSKEVATAI Sbjct: 86 QIIDMLIGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAI 145 Query: 436 RGAIILAKLSVLPVRRGYWGNKIGS-HT 516 RGAIILAKLSV+PVRRGYWGNKIG HT Sbjct: 146 RGAIILAKLSVVPVRRGYWGNKIGKPHT 173 Score = 89.0 bits (211), Expect = 2e-18 Identities = 38/50 (76%), Positives = 45/50 (90%) Frame = +3 Query: 507 KPHTVPCKVTGKCGSVTVRLIPAPRCTGIVSAPVPKKLLQMAGVQDCYTS 656 KPHTVPCKVTGKCGSVTVR++PAPR +GIV+A VPKK+LQ AG+ D +TS Sbjct: 170 KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTS 219 Score = 52.8 bits (121), Expect = 2e-07 Identities = 22/35 (62%), Positives = 29/35 (82%) Frame = +2 Query: 149 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKE 253 ++++WVPVTKLGRLV G I ++E IYL SLP+KE Sbjct: 50 EEEKWVPVTKLGRLVAAGHIKQIEQIYLHSLPVKE 84 >At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) similar to ribosomal protein S2 GI:430711 from [Drosophila melanogaster] Length = 284 Score = 159 bits (386), Expect = 2e-39 Identities = 74/88 (84%), Positives = 81/88 (92%), Gaps = 1/88 (1%) Frame = +1 Query: 256 EIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAI 435 +IID +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSKEVATAI Sbjct: 85 QIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAI 144 Query: 436 RGAIILAKLSVLPVRRGYWGNKIGS-HT 516 RGAIILAKLSV+PVRRGYWGNKIG HT Sbjct: 145 RGAIILAKLSVVPVRRGYWGNKIGKPHT 172 Score = 89.0 bits (211), Expect = 2e-18 Identities = 38/50 (76%), Positives = 45/50 (90%) Frame = +3 Query: 507 KPHTVPCKVTGKCGSVTVRLIPAPRCTGIVSAPVPKKLLQMAGVQDCYTS 656 KPHTVPCKVTGKCGSVTVR++PAPR +GIV+A VPKK+LQ AG+ D +TS Sbjct: 169 KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTS 218 Score = 55.6 bits (128), Expect = 3e-08 Identities = 24/35 (68%), Positives = 29/35 (82%) Frame = +2 Query: 149 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKE 253 ++ +WVPVTKLGRLV + KI KLE IYL SLP+KE Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKE 83 >At1g58983.1 68414.m06666 40S ribosomal protein S2, putative similar to ribosomal protein S2 GI:939717 from [Urechis caupo] Length = 284 Score = 159 bits (386), Expect = 2e-39 Identities = 74/88 (84%), Positives = 81/88 (92%), Gaps = 1/88 (1%) Frame = +1 Query: 256 EIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAI 435 +IID +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSKEVATAI Sbjct: 85 QIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAI 144 Query: 436 RGAIILAKLSVLPVRRGYWGNKIGS-HT 516 RGAIILAKLSV+PVRRGYWGNKIG HT Sbjct: 145 RGAIILAKLSVVPVRRGYWGNKIGKPHT 172 Score = 89.0 bits (211), Expect = 2e-18 Identities = 38/50 (76%), Positives = 45/50 (90%) Frame = +3 Query: 507 KPHTVPCKVTGKCGSVTVRLIPAPRCTGIVSAPVPKKLLQMAGVQDCYTS 656 KPHTVPCKVTGKCGSVTVR++PAPR +GIV+A VPKK+LQ AG+ D +TS Sbjct: 169 KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTS 218 Score = 55.6 bits (128), Expect = 3e-08 Identities = 24/35 (68%), Positives = 29/35 (82%) Frame = +2 Query: 149 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKE 253 ++ +WVPVTKLGRLV + KI KLE IYL SLP+KE Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKE 83 >At1g58684.1 68414.m06657 40S ribosomal protein S2, putative Length = 284 Score = 159 bits (386), Expect = 2e-39 Identities = 74/88 (84%), Positives = 81/88 (92%), Gaps = 1/88 (1%) Frame = +1 Query: 256 EIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAI 435 +IID +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSKEVATAI Sbjct: 85 QIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAI 144 Query: 436 RGAIILAKLSVLPVRRGYWGNKIGS-HT 516 RGAIILAKLSV+PVRRGYWGNKIG HT Sbjct: 145 RGAIILAKLSVVPVRRGYWGNKIGKPHT 172 Score = 89.0 bits (211), Expect = 2e-18 Identities = 38/50 (76%), Positives = 45/50 (90%) Frame = +3 Query: 507 KPHTVPCKVTGKCGSVTVRLIPAPRCTGIVSAPVPKKLLQMAGVQDCYTS 656 KPHTVPCKVTGKCGSVTVR++PAPR +GIV+A VPKK+LQ AG+ D +TS Sbjct: 169 KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTS 218 Score = 55.6 bits (128), Expect = 3e-08 Identities = 24/35 (68%), Positives = 29/35 (82%) Frame = +2 Query: 149 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKE 253 ++ +WVPVTKLGRLV + KI KLE IYL SLP+KE Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKE 83 >At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) similar to ribosomal protein S2 GI:939717 from (Urechis caupo) Length = 284 Score = 159 bits (386), Expect = 2e-39 Identities = 74/88 (84%), Positives = 81/88 (92%), Gaps = 1/88 (1%) Frame = +1 Query: 256 EIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAI 435 +IID +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSKEVATAI Sbjct: 85 QIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAI 144 Query: 436 RGAIILAKLSVLPVRRGYWGNKIGS-HT 516 RGAIILAKLSV+PVRRGYWGNKIG HT Sbjct: 145 RGAIILAKLSVVPVRRGYWGNKIGKPHT 172 Score = 89.0 bits (211), Expect = 2e-18 Identities = 38/50 (76%), Positives = 45/50 (90%) Frame = +3 Query: 507 KPHTVPCKVTGKCGSVTVRLIPAPRCTGIVSAPVPKKLLQMAGVQDCYTS 656 KPHTVPCKVTGKCGSVTVR++PAPR +GIV+A VPKK+LQ AG+ D +TS Sbjct: 169 KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTS 218 Score = 55.6 bits (128), Expect = 3e-08 Identities = 24/35 (68%), Positives = 29/35 (82%) Frame = +2 Query: 149 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKE 253 ++ +WVPVTKLGRLV + KI KLE IYL SLP+KE Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKE 83 >At2g33800.1 68415.m04147 ribosomal protein S5 family protein contains Pfam profiles PF03719: Ribosomal protein S5, C-terminal domain, PF00333: Ribosomal protein S5, N-terminal domain Length = 303 Score = 47.2 bits (107), Expect = 1e-05 Identities = 19/62 (30%), Positives = 40/62 (64%) Frame = +1 Query: 292 DEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVL 471 + V+++ V K + G++ +F+A V +GD G++G+G +KEV A++ + I A+ +++ Sbjct: 149 ERVVQVRRVTKVVKGGKQLKFRAIVVVGDKQGNVGVGCAKAKEVVAAVQKSAIDARRNIV 208 Query: 472 PV 477 V Sbjct: 209 QV 210 Score = 31.5 bits (68), Expect = 0.51 Identities = 16/46 (34%), Positives = 26/46 (56%) Frame = +3 Query: 507 KPHTVPCKVTGKCGSVTVRLIPAPRCTGIVSAPVPKKLLQMAGVQD 644 K T P + G G+ V L PA TG+++ + +L+MAGV++ Sbjct: 214 KYSTFPHRSEGDYGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVEN 259 >At1g80480.1 68414.m09427 PRLI-interacting factor L, putative similar to PRLI-interacting factor L [Arabidopsis thaliana] GI:11139268; contains Pfam profile PF02492: Cobalamin synthesis protein/P47K Length = 444 Score = 29.1 bits (62), Expect = 2.7 Identities = 10/20 (50%), Positives = 11/20 (55%) Frame = -1 Query: 134 HDHGRDHDRVHEDRHGLYLH 75 HDH DHD H D H + H Sbjct: 320 HDHNHDHDHHHHDGHDHHHH 339 >At5g01770.1 68418.m00096 transducin family protein / WD-40 repeat family protein similar to WD-repeat protein mip1 (SP:P87141) [Schizosaccharomyces pombe] Length = 1354 Score = 28.7 bits (61), Expect = 3.6 Identities = 10/21 (47%), Positives = 15/21 (71%) Frame = -2 Query: 541 LPVTLQGTVCGFLSCYPSNLF 479 LP+ LQG + GF+ PSN++ Sbjct: 429 LPIVLQGAITGFILPLPSNIY 449 >At3g18530.1 68416.m02357 expressed protein similar to unknown protein GB:AAF24615 from [Arabidopsis thaliana] Length = 297 Score = 28.7 bits (61), Expect = 3.6 Identities = 22/72 (30%), Positives = 32/72 (44%) Frame = -1 Query: 500 LLPQ*PLRTGRTDSLARIIAPRMAVATSLLHFTPKPI*PLLSPMATNALKRVRCPARVCF 321 LL Q L++ + A R VA + H +P + P L P N R+R A CF Sbjct: 166 LLTQLLLKSSQDKRFVCEAAERALVAMTT-HVSPALLLPKLRPCLKNKSPRIRAKASACF 224 Query: 320 CTGMILRTSSFR 285 +G + R + R Sbjct: 225 -SGCVPRLEAAR 235 >At3g01450.1 68416.m00069 expressed protein Length = 326 Score = 28.7 bits (61), Expect = 3.6 Identities = 19/63 (30%), Positives = 28/63 (44%) Frame = -1 Query: 509 LPILLPQ*PLRTGRTDSLARIIAPRMAVATSLLHFTPKPI*PLLSPMATNALKRVRCPAR 330 L +LL Q L++ + A + VA + H +P + P L P N R+R A Sbjct: 163 LDLLLTQLLLKSSQDKRFVCEAAEKALVAMTA-HVSPALLLPKLQPFLKNRNPRIRAKAS 221 Query: 329 VCF 321 CF Sbjct: 222 TCF 224 >At5g59520.1 68418.m07459 zinc transporter (ZIP2) identical to zinc transporter ZIP2 [Arabidopsis thaliana] gi|3252868|gb|AAC24198; member of the Zinc (Zn2+)-Iron (Fe2+) permease (ZIP) family, PMID:11500563 Length = 353 Score = 28.3 bits (60), Expect = 4.8 Identities = 12/21 (57%), Positives = 14/21 (66%) Frame = +1 Query: 358 AFVAIGDNNGHIGLGVKCSKE 420 AFVA G NN H+G V S+E Sbjct: 149 AFVAAGSNNNHVGASVGESRE 169 >At4g03740.1 68417.m00513 hypothetical protein Length = 345 Score = 27.9 bits (59), Expect = 6.3 Identities = 8/23 (34%), Positives = 13/23 (56%) Frame = +2 Query: 527 QGHRQVWFRNSPADSCPSLYWYC 595 + ++++WFR SCP W C Sbjct: 60 RNNQEIWFRTFALGSCPHTLWPC 82 >At3g63100.1 68416.m07087 glycine-rich protein Length = 199 Score = 27.9 bits (59), Expect = 6.3 Identities = 16/35 (45%), Positives = 17/35 (48%), Gaps = 4/35 (11%) Frame = -1 Query: 128 HGRDH----DRVHEDRHGLYLHRVIRIRRENRHVH 36 HGRDH DR H HG + HR R R H H Sbjct: 109 HGRDHRHGRDRGHHRGHGHHHHRGHRRGRGRGHGH 143 >At3g61940.1 68416.m06956 zinc transporter, putative similar to zinc transporter ZAT [Arabidopsis thaliana] gi|4206640|gb|AAD11757; similar to zinc transporter ZnT-2 [Rattus norvegicus] gi|1256378|gb|AAB02775; member of the cation diffusion facilitator (CDF) family, or cation efflux (CE) family, PMID:11500563 Length = 334 Score = 27.9 bits (59), Expect = 6.3 Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 1/36 (2%) Frame = -1 Query: 134 HDHGRDHDRVHEDRHG-LYLHRVIRIRRENRHVHRL 30 HDHG HD H HG Y R ++ +++ + + Sbjct: 158 HDHGHGHDHGHSHDHGHSYGERAEQLLEKSKEIRNI 193 >At2g04050.1 68415.m00386 MATE efflux family protein similar to ripening regulated protein DDTFR18 [Lycopersicon esculentum] GI:12231296; contains Pfam profile: PF01554 uncharacterized membrane protein family Length = 476 Score = 27.9 bits (59), Expect = 6.3 Identities = 12/18 (66%), Positives = 12/18 (66%) Frame = +3 Query: 513 HTVPCKVTGKCGSVTVRL 566 H VPCK T K G VTV L Sbjct: 11 HLVPCKDTWKSGQVTVEL 28 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 14,274,473 Number of Sequences: 28952 Number of extensions: 312493 Number of successful extensions: 861 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 802 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 857 length of database: 12,070,560 effective HSP length: 78 effective length of database: 9,812,304 effective search space used: 1373722560 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -