Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0494
(656 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S ri... 160 6e-40
At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C) 160 9e-40
At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) simila... 159 2e-39
At1g58983.1 68414.m06666 40S ribosomal protein S2, putative simi... 159 2e-39
At1g58684.1 68414.m06657 40S ribosomal protein S2, putative 159 2e-39
At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) simila... 159 2e-39
At2g33800.1 68415.m04147 ribosomal protein S5 family protein con... 47 1e-05
At1g80480.1 68414.m09427 PRLI-interacting factor L, putative sim... 29 2.7
At5g01770.1 68418.m00096 transducin family protein / WD-40 repea... 29 3.6
At3g18530.1 68416.m02357 expressed protein similar to unknown pr... 29 3.6
At3g01450.1 68416.m00069 expressed protein 29 3.6
At5g59520.1 68418.m07459 zinc transporter (ZIP2) identical to zi... 28 4.8
At4g03740.1 68417.m00513 hypothetical protein 28 6.3
At3g63100.1 68416.m07087 glycine-rich protein 28 6.3
At3g61940.1 68416.m06956 zinc transporter, putative similar to z... 28 6.3
At2g04050.1 68415.m00386 MATE efflux family protein similar to r... 28 6.3
>At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S
ribosomal protein S2 - Arabidopsis thaliana,
SWISSPROT:RS2_ARATH
Length = 276
Score = 160 bits (389), Expect = 6e-40
Identities = 73/88 (82%), Positives = 82/88 (93%), Gaps = 1/88 (1%)
Frame = +1
Query: 256 EIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAI 435
+IID +GPSL DEV+KIMPVQKQTRAGQRTRFKAF+ +GD+NGH+GLGVKCSKEVATAI
Sbjct: 77 QIIDLLVGPSLKDEVMKIMPVQKQTRAGQRTRFKAFIVVGDSNGHVGLGVKCSKEVATAI 136
Query: 436 RGAIILAKLSVLPVRRGYWGNKIGS-HT 516
RGAIILAKLSV+P+RRGYWGNKIG HT
Sbjct: 137 RGAIILAKLSVVPIRRGYWGNKIGKPHT 164
Score = 89.0 bits (211), Expect = 2e-18
Identities = 38/50 (76%), Positives = 45/50 (90%)
Frame = +3
Query: 507 KPHTVPCKVTGKCGSVTVRLIPAPRCTGIVSAPVPKKLLQMAGVQDCYTS 656
KPHTVPCKVTGKCGSVTVR++PAPR +GIV+A VPKK+LQ AG+ D +TS
Sbjct: 161 KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTS 210
Score = 60.5 bits (140), Expect = 1e-09
Identities = 25/35 (71%), Positives = 32/35 (91%)
Frame = +2
Query: 149 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKE 253
++++WVPVTKLGRLV+EGKI K+E IYL SLP+KE
Sbjct: 41 EEEKWVPVTKLGRLVKEGKITKIEQIYLHSLPVKE 75
>At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C)
Length = 285
Score = 160 bits (388), Expect = 9e-40
Identities = 74/88 (84%), Positives = 81/88 (92%), Gaps = 1/88 (1%)
Frame = +1
Query: 256 EIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAI 435
+IID +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSKEVATAI
Sbjct: 86 QIIDMLIGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAI 145
Query: 436 RGAIILAKLSVLPVRRGYWGNKIGS-HT 516
RGAIILAKLSV+PVRRGYWGNKIG HT
Sbjct: 146 RGAIILAKLSVVPVRRGYWGNKIGKPHT 173
Score = 89.0 bits (211), Expect = 2e-18
Identities = 38/50 (76%), Positives = 45/50 (90%)
Frame = +3
Query: 507 KPHTVPCKVTGKCGSVTVRLIPAPRCTGIVSAPVPKKLLQMAGVQDCYTS 656
KPHTVPCKVTGKCGSVTVR++PAPR +GIV+A VPKK+LQ AG+ D +TS
Sbjct: 170 KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTS 219
Score = 52.8 bits (121), Expect = 2e-07
Identities = 22/35 (62%), Positives = 29/35 (82%)
Frame = +2
Query: 149 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKE 253
++++WVPVTKLGRLV G I ++E IYL SLP+KE
Sbjct: 50 EEEKWVPVTKLGRLVAAGHIKQIEQIYLHSLPVKE 84
>At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) similar
to ribosomal protein S2 GI:430711 from [Drosophila
melanogaster]
Length = 284
Score = 159 bits (386), Expect = 2e-39
Identities = 74/88 (84%), Positives = 81/88 (92%), Gaps = 1/88 (1%)
Frame = +1
Query: 256 EIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAI 435
+IID +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSKEVATAI
Sbjct: 85 QIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAI 144
Query: 436 RGAIILAKLSVLPVRRGYWGNKIGS-HT 516
RGAIILAKLSV+PVRRGYWGNKIG HT
Sbjct: 145 RGAIILAKLSVVPVRRGYWGNKIGKPHT 172
Score = 89.0 bits (211), Expect = 2e-18
Identities = 38/50 (76%), Positives = 45/50 (90%)
Frame = +3
Query: 507 KPHTVPCKVTGKCGSVTVRLIPAPRCTGIVSAPVPKKLLQMAGVQDCYTS 656
KPHTVPCKVTGKCGSVTVR++PAPR +GIV+A VPKK+LQ AG+ D +TS
Sbjct: 169 KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTS 218
Score = 55.6 bits (128), Expect = 3e-08
Identities = 24/35 (68%), Positives = 29/35 (82%)
Frame = +2
Query: 149 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKE 253
++ +WVPVTKLGRLV + KI KLE IYL SLP+KE
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKE 83
>At1g58983.1 68414.m06666 40S ribosomal protein S2, putative similar
to ribosomal protein S2 GI:939717 from [Urechis caupo]
Length = 284
Score = 159 bits (386), Expect = 2e-39
Identities = 74/88 (84%), Positives = 81/88 (92%), Gaps = 1/88 (1%)
Frame = +1
Query: 256 EIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAI 435
+IID +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSKEVATAI
Sbjct: 85 QIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAI 144
Query: 436 RGAIILAKLSVLPVRRGYWGNKIGS-HT 516
RGAIILAKLSV+PVRRGYWGNKIG HT
Sbjct: 145 RGAIILAKLSVVPVRRGYWGNKIGKPHT 172
Score = 89.0 bits (211), Expect = 2e-18
Identities = 38/50 (76%), Positives = 45/50 (90%)
Frame = +3
Query: 507 KPHTVPCKVTGKCGSVTVRLIPAPRCTGIVSAPVPKKLLQMAGVQDCYTS 656
KPHTVPCKVTGKCGSVTVR++PAPR +GIV+A VPKK+LQ AG+ D +TS
Sbjct: 169 KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTS 218
Score = 55.6 bits (128), Expect = 3e-08
Identities = 24/35 (68%), Positives = 29/35 (82%)
Frame = +2
Query: 149 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKE 253
++ +WVPVTKLGRLV + KI KLE IYL SLP+KE
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKE 83
>At1g58684.1 68414.m06657 40S ribosomal protein S2, putative
Length = 284
Score = 159 bits (386), Expect = 2e-39
Identities = 74/88 (84%), Positives = 81/88 (92%), Gaps = 1/88 (1%)
Frame = +1
Query: 256 EIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAI 435
+IID +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSKEVATAI
Sbjct: 85 QIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAI 144
Query: 436 RGAIILAKLSVLPVRRGYWGNKIGS-HT 516
RGAIILAKLSV+PVRRGYWGNKIG HT
Sbjct: 145 RGAIILAKLSVVPVRRGYWGNKIGKPHT 172
Score = 89.0 bits (211), Expect = 2e-18
Identities = 38/50 (76%), Positives = 45/50 (90%)
Frame = +3
Query: 507 KPHTVPCKVTGKCGSVTVRLIPAPRCTGIVSAPVPKKLLQMAGVQDCYTS 656
KPHTVPCKVTGKCGSVTVR++PAPR +GIV+A VPKK+LQ AG+ D +TS
Sbjct: 169 KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTS 218
Score = 55.6 bits (128), Expect = 3e-08
Identities = 24/35 (68%), Positives = 29/35 (82%)
Frame = +2
Query: 149 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKE 253
++ +WVPVTKLGRLV + KI KLE IYL SLP+KE
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKE 83
>At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) similar
to ribosomal protein S2 GI:939717 from (Urechis caupo)
Length = 284
Score = 159 bits (386), Expect = 2e-39
Identities = 74/88 (84%), Positives = 81/88 (92%), Gaps = 1/88 (1%)
Frame = +1
Query: 256 EIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAI 435
+IID +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSKEVATAI
Sbjct: 85 QIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAI 144
Query: 436 RGAIILAKLSVLPVRRGYWGNKIGS-HT 516
RGAIILAKLSV+PVRRGYWGNKIG HT
Sbjct: 145 RGAIILAKLSVVPVRRGYWGNKIGKPHT 172
Score = 89.0 bits (211), Expect = 2e-18
Identities = 38/50 (76%), Positives = 45/50 (90%)
Frame = +3
Query: 507 KPHTVPCKVTGKCGSVTVRLIPAPRCTGIVSAPVPKKLLQMAGVQDCYTS 656
KPHTVPCKVTGKCGSVTVR++PAPR +GIV+A VPKK+LQ AG+ D +TS
Sbjct: 169 KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTS 218
Score = 55.6 bits (128), Expect = 3e-08
Identities = 24/35 (68%), Positives = 29/35 (82%)
Frame = +2
Query: 149 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKE 253
++ +WVPVTKLGRLV + KI KLE IYL SLP+KE
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKE 83
>At2g33800.1 68415.m04147 ribosomal protein S5 family protein
contains Pfam profiles PF03719: Ribosomal protein S5,
C-terminal domain, PF00333: Ribosomal protein S5,
N-terminal domain
Length = 303
Score = 47.2 bits (107), Expect = 1e-05
Identities = 19/62 (30%), Positives = 40/62 (64%)
Frame = +1
Query: 292 DEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVL 471
+ V+++ V K + G++ +F+A V +GD G++G+G +KEV A++ + I A+ +++
Sbjct: 149 ERVVQVRRVTKVVKGGKQLKFRAIVVVGDKQGNVGVGCAKAKEVVAAVQKSAIDARRNIV 208
Query: 472 PV 477
V
Sbjct: 209 QV 210
Score = 31.5 bits (68), Expect = 0.51
Identities = 16/46 (34%), Positives = 26/46 (56%)
Frame = +3
Query: 507 KPHTVPCKVTGKCGSVTVRLIPAPRCTGIVSAPVPKKLLQMAGVQD 644
K T P + G G+ V L PA TG+++ + +L+MAGV++
Sbjct: 214 KYSTFPHRSEGDYGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVEN 259
>At1g80480.1 68414.m09427 PRLI-interacting factor L, putative
similar to PRLI-interacting factor L [Arabidopsis
thaliana] GI:11139268; contains Pfam profile PF02492:
Cobalamin synthesis protein/P47K
Length = 444
Score = 29.1 bits (62), Expect = 2.7
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = -1
Query: 134 HDHGRDHDRVHEDRHGLYLH 75
HDH DHD H D H + H
Sbjct: 320 HDHNHDHDHHHHDGHDHHHH 339
>At5g01770.1 68418.m00096 transducin family protein / WD-40 repeat
family protein similar to WD-repeat protein mip1
(SP:P87141) [Schizosaccharomyces pombe]
Length = 1354
Score = 28.7 bits (61), Expect = 3.6
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = -2
Query: 541 LPVTLQGTVCGFLSCYPSNLF 479
LP+ LQG + GF+ PSN++
Sbjct: 429 LPIVLQGAITGFILPLPSNIY 449
>At3g18530.1 68416.m02357 expressed protein similar to unknown
protein GB:AAF24615 from [Arabidopsis thaliana]
Length = 297
Score = 28.7 bits (61), Expect = 3.6
Identities = 22/72 (30%), Positives = 32/72 (44%)
Frame = -1
Query: 500 LLPQ*PLRTGRTDSLARIIAPRMAVATSLLHFTPKPI*PLLSPMATNALKRVRCPARVCF 321
LL Q L++ + A R VA + H +P + P L P N R+R A CF
Sbjct: 166 LLTQLLLKSSQDKRFVCEAAERALVAMTT-HVSPALLLPKLRPCLKNKSPRIRAKASACF 224
Query: 320 CTGMILRTSSFR 285
+G + R + R
Sbjct: 225 -SGCVPRLEAAR 235
>At3g01450.1 68416.m00069 expressed protein
Length = 326
Score = 28.7 bits (61), Expect = 3.6
Identities = 19/63 (30%), Positives = 28/63 (44%)
Frame = -1
Query: 509 LPILLPQ*PLRTGRTDSLARIIAPRMAVATSLLHFTPKPI*PLLSPMATNALKRVRCPAR 330
L +LL Q L++ + A + VA + H +P + P L P N R+R A
Sbjct: 163 LDLLLTQLLLKSSQDKRFVCEAAEKALVAMTA-HVSPALLLPKLQPFLKNRNPRIRAKAS 221
Query: 329 VCF 321
CF
Sbjct: 222 TCF 224
>At5g59520.1 68418.m07459 zinc transporter (ZIP2) identical to zinc
transporter ZIP2 [Arabidopsis thaliana]
gi|3252868|gb|AAC24198; member of the Zinc (Zn2+)-Iron
(Fe2+) permease (ZIP) family, PMID:11500563
Length = 353
Score = 28.3 bits (60), Expect = 4.8
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +1
Query: 358 AFVAIGDNNGHIGLGVKCSKE 420
AFVA G NN H+G V S+E
Sbjct: 149 AFVAAGSNNNHVGASVGESRE 169
>At4g03740.1 68417.m00513 hypothetical protein
Length = 345
Score = 27.9 bits (59), Expect = 6.3
Identities = 8/23 (34%), Positives = 13/23 (56%)
Frame = +2
Query: 527 QGHRQVWFRNSPADSCPSLYWYC 595
+ ++++WFR SCP W C
Sbjct: 60 RNNQEIWFRTFALGSCPHTLWPC 82
>At3g63100.1 68416.m07087 glycine-rich protein
Length = 199
Score = 27.9 bits (59), Expect = 6.3
Identities = 16/35 (45%), Positives = 17/35 (48%), Gaps = 4/35 (11%)
Frame = -1
Query: 128 HGRDH----DRVHEDRHGLYLHRVIRIRRENRHVH 36
HGRDH DR H HG + HR R R H H
Sbjct: 109 HGRDHRHGRDRGHHRGHGHHHHRGHRRGRGRGHGH 143
>At3g61940.1 68416.m06956 zinc transporter, putative similar to zinc
transporter ZAT [Arabidopsis thaliana]
gi|4206640|gb|AAD11757; similar to zinc transporter
ZnT-2 [Rattus norvegicus] gi|1256378|gb|AAB02775; member
of the cation diffusion facilitator (CDF) family, or
cation efflux (CE) family, PMID:11500563
Length = 334
Score = 27.9 bits (59), Expect = 6.3
Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Frame = -1
Query: 134 HDHGRDHDRVHEDRHG-LYLHRVIRIRRENRHVHRL 30
HDHG HD H HG Y R ++ +++ + +
Sbjct: 158 HDHGHGHDHGHSHDHGHSYGERAEQLLEKSKEIRNI 193
>At2g04050.1 68415.m00386 MATE efflux family protein similar to
ripening regulated protein DDTFR18 [Lycopersicon
esculentum] GI:12231296; contains Pfam profile: PF01554
uncharacterized membrane protein family
Length = 476
Score = 27.9 bits (59), Expect = 6.3
Identities = 12/18 (66%), Positives = 12/18 (66%)
Frame = +3
Query: 513 HTVPCKVTGKCGSVTVRL 566
H VPCK T K G VTV L
Sbjct: 11 HLVPCKDTWKSGQVTVEL 28
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,274,473
Number of Sequences: 28952
Number of extensions: 312493
Number of successful extensions: 861
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 802
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 857
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1373722560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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