Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0493
(701 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3 |Schizos... 56 4e-09
SPAC824.09c |||GTPase activating protein |Schizosaccharomyces po... 56 4e-09
SPCC622.14 |||GTPase activating protein |Schizosaccharomyces pom... 51 1e-07
SPAC22E12.17c |glo3||ARF GTPase activating protein|Schizosacchar... 44 3e-05
SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|ch... 40 3e-04
SPBC2G5.03 |||ATP binding protein|Schizosaccharomyces pombe|chr ... 30 0.28
SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomy... 27 2.6
SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyce... 26 6.0
SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces po... 25 7.9
>SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 601
Score = 56.4 bits (130), Expect = 4e-09
Identities = 29/77 (37%), Positives = 49/77 (63%), Gaps = 2/77 (2%)
Frame = +1
Query: 25 KNLEILRELI-SLNGNKYCLDCNQRGPTYVNTTIGSFVCSKCSGMLRGL-TPPHRVKSIS 198
+N +REL+ S++GN C DC+ RG + + +G F+C +C+ + R L T +VKSIS
Sbjct: 5 RNETAIRELVQSVSGNNLCADCSTRGVQWASWNLGIFLCLRCATIHRKLGTHVSKVKSIS 64
Query: 199 MATFTPEEIEFIKSRGN 249
+ ++ ++IE +K GN
Sbjct: 65 LDEWSNDQIEKMKHWGN 81
>SPAC824.09c |||GTPase activating protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 320
Score = 56.4 bits (130), Expect = 4e-09
Identities = 28/90 (31%), Positives = 51/90 (56%), Gaps = 2/90 (2%)
Frame = +1
Query: 4 NRRKQDDKNLEILRELISLNGNKYCLDCNQRG-PTYVNTTIGSFVCSKCSGMLRGL-TPP 177
++ K+ + N +L+ L+ NK C DC + P + + +G F+C +CSG+ R L
Sbjct: 4 SKSKKKESNALVLKSLLREPYNKVCADCKRNEQPRWASWNLGVFICIRCSGVHRSLGVHV 63
Query: 178 HRVKSISMATFTPEEIEFIKSRGNDYVDLF 267
RVKS+ + ++T E+ E + GN+ +L+
Sbjct: 64 SRVKSVDLDSWTDEQTENMTRWGNERANLY 93
>SPCC622.14 |||GTPase activating protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 309
Score = 51.2 bits (117), Expect = 1e-07
Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Frame = +1
Query: 40 LRELISLNGNKYCLDCNQRGPTYVNTTIGSFVCSKCSGMLRGL-TPPHRVKSISMATFTP 216
L +L L NK C DC+ P + + +G F+C CSG RGL V+SI+M ++
Sbjct: 5 LDQLTRLPENKKCFDCDAPNPQWASCNLGIFICLDCSGQHRGLGVEKSFVRSITMDNWSE 64
Query: 217 EEIEFIKSRGNDYVDLF 267
+++ ++ GN F
Sbjct: 65 RQVKMMEVGGNSNAKTF 81
>SPAC22E12.17c |glo3||ARF GTPase activating
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 486
Score = 43.6 bits (98), Expect = 3e-05
Identities = 17/49 (34%), Positives = 28/49 (57%)
Frame = +1
Query: 22 DKNLEILRELISLNGNKYCLDCNQRGPTYVNTTIGSFVCSKCSGMLRGL 168
+++ ++L L S NK C DC + PT+ +TT G ++C CS R +
Sbjct: 6 EESQKLLTSLRSQRDNKVCFDCGAKNPTWSSTTFGIYLCLDCSAAHRNM 54
>SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 870
Score = 40.3 bits (90), Expect = 3e-04
Identities = 21/89 (23%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Frame = +1
Query: 4 NRRKQDDKNLEILRELISLNGN-KYCLDCNQRGPT-YVNTTIGSFVCSKCSGMLRGL-TP 174
++ K+ K+ +++ L ++ + + C DCN + +C CSG+ R L T
Sbjct: 661 SKEKKQTKSPSLVKTLKEMHSSDQSCADCNTTARVEWCAINFPVVLCIDCSGIHRSLGTH 720
Query: 175 PHRVKSISMATFTPEEIEFIKSRGNDYVD 261
+++S+++ F PE ++ + + GN +V+
Sbjct: 721 ITKIRSLTLDKFNPETVDLLYATGNSFVN 749
>SPBC2G5.03 |||ATP binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 335
Score = 30.3 bits (65), Expect = 0.28
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +1
Query: 67 NKYCLDCNQRGPTYVNTTIGSFVCSKC 147
NK C CN+R P V G +C +C
Sbjct: 3 NKLCQLCNERRPALVRPKTGQKICKEC 29
>SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 773
Score = 27.1 bits (57), Expect = 2.6
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = +1
Query: 109 VNTTIGSFVCSKCSGMLRGLTPPHRVKSISMATFTPEE 222
V+ IG V S +L+ P + S TFTPEE
Sbjct: 587 VSEAIGGIVSQNASDILQTFLRPASLTSEEKPTFTPEE 624
>SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1297
Score = 25.8 bits (54), Expect = 6.0
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +1
Query: 40 LRELISLNGNKYCLDCNQ 93
LR+ + LNG +YC+ NQ
Sbjct: 895 LRDSLDLNGKRYCIMLNQ 912
>SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 507
Score = 25.4 bits (53), Expect = 7.9
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = -2
Query: 691 KINREIRYRRCDCSSWSRNC 632
+I R ++Y DCS W+ C
Sbjct: 391 QIPRTLQYGNADCSCWTTGC 410
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,466,023
Number of Sequences: 5004
Number of extensions: 47671
Number of successful extensions: 124
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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