Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0493
         (701 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45593| Best HMM Match : ArfGap (HMM E-Value=3.3e-37)               130   1e-30
SB_20359| Best HMM Match : No HMM Matches (HMM E-Value=.)              59   3e-09
SB_30371| Best HMM Match : No HMM Matches (HMM E-Value=.)              56   2e-08
SB_17655| Best HMM Match : ArfGap (HMM E-Value=0.015)                  29   3.6  
SB_30518| Best HMM Match : FYVE (HMM E-Value=1.2e-18)                  29   4.8  
SB_8981| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.8  

>SB_45593| Best HMM Match : ArfGap (HMM E-Value=3.3e-37)
          Length = 732

 Score =  130 bits (313), Expect = 1e-30
 Identities = 56/82 (68%), Positives = 68/82 (82%)
 Frame = +1

Query: 7   RRKQDDKNLEILRELISLNGNKYCLDCNQRGPTYVNTTIGSFVCSKCSGMLRGLTPPHRV 186
           R+KQD+KNL+ILR+L S   NK C DC QRGPTYVN TIGSFVC+ CSG+LRGL PP RV
Sbjct: 5   RKKQDEKNLKILRDLASQQHNKKCFDCGQRGPTYVNMTIGSFVCTSCSGILRGLNPPQRV 64

Query: 187 KSISMATFTPEEIEFIKSRGND 252
           KSISM +FTP+EIE+++  GN+
Sbjct: 65  KSISMTSFTPQEIEYLQGAGNE 86



 Score = 42.3 bits (95), Expect = 4e-04
 Identities = 17/41 (41%), Positives = 28/41 (68%), Gaps = 3/41 (7%)
 Frame = +3

Query: 252 LCRLVWLGLYDGESI---NFTDEQSVRDFMLDKYEKKRYYL 365
           +C+  WLGL++  +       DEQ V+DFM+ KYE++R+Y+
Sbjct: 87  VCKKTWLGLWNSANNPEPESRDEQKVKDFMIQKYERRRWYI 127


>SB_20359| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4700

 Score = 59.3 bits (137), Expect = 3e-09
 Identities = 29/78 (37%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
 Frame = +1

Query: 22  DKNLEILRELISLNGNKYCLDCNQRGPTYVNTTIGSFVCSKCSGMLRGL-TPPHRVKSIS 198
           +KN   L EL    GN  C DC  + P + + + G F+C  CSG+ R L T    VKS+ 
Sbjct: 2   EKNRNALLELAKRPGNNTCADCGAKHPEWASASKGIFICITCSGVHRNLGTQISVVKSLR 61

Query: 199 MATFTPEEIEFIKSRGND 252
           + T+T E ++F+   GN+
Sbjct: 62  LDTWTDERLQFMIENGNE 79


>SB_30371| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 955

 Score = 56.4 bits (130), Expect = 2e-08
 Identities = 26/80 (32%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
 Frame = +1

Query: 13  KQDDKNLEILRELISLNGNKYCLDCNQRGPTYVNTTIGSFVCSKCSGMLRGL-TPPHRVK 189
           ++++  L I++++  L GN  C DC  + PT+++T +G   C +CSG+ RG+     RV+
Sbjct: 80  EKNELRLSIVKQVQRLPGNDTCADCTSKDPTWLSTNLGVLTCIECSGVHRGMGVHVSRVQ 139

Query: 190 SISMATFTPEEIEFIKSRGN 249
           SI++      E+   K+ GN
Sbjct: 140 SITLDNIGTAELLLAKAIGN 159


>SB_17655| Best HMM Match : ArfGap (HMM E-Value=0.015)
          Length = 401

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +1

Query: 4   NRRKQDDKNLEILRELISLNGNKYCLDCNQRG 99
           N+  + + N  IL +++    NKYC DC  +G
Sbjct: 8   NKDNKQNANQAILVDMLKEEKNKYCADCAAKG 39


>SB_30518| Best HMM Match : FYVE (HMM E-Value=1.2e-18)
          Length = 447

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 17/54 (31%), Positives = 21/54 (38%)
 Frame = +1

Query: 70  KYCLDCNQRGPTYVNTTIGSFVCSKCSGMLRGLTPPHRVKSISMATFTPEEIEF 231
           K C+ C  R      T      C KC G+  G     RV  +S+    P  IEF
Sbjct: 385 KTCMACKTR----FTTVRRRHHCRKCGGVFCGACSSKRVPILSLGYSAPNSIEF 434


>SB_8981| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1726

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = +1

Query: 115 TTIGSFVCSKCSGMLRGLTPP-HRVKSIS 198
           TTIGS    + +G   G+TPP HR+K +S
Sbjct: 841 TTIGSENIPRLTGSCGGVTPPIHRIKFVS 869


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,001,320
Number of Sequences: 59808
Number of extensions: 349713
Number of successful extensions: 885
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 807
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 883
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1841633001
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)