BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e40h0493 (701 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_45593| Best HMM Match : ArfGap (HMM E-Value=3.3e-37) 130 1e-30 SB_20359| Best HMM Match : No HMM Matches (HMM E-Value=.) 59 3e-09 SB_30371| Best HMM Match : No HMM Matches (HMM E-Value=.) 56 2e-08 SB_17655| Best HMM Match : ArfGap (HMM E-Value=0.015) 29 3.6 SB_30518| Best HMM Match : FYVE (HMM E-Value=1.2e-18) 29 4.8 SB_8981| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8 >SB_45593| Best HMM Match : ArfGap (HMM E-Value=3.3e-37) Length = 732 Score = 130 bits (313), Expect = 1e-30 Identities = 56/82 (68%), Positives = 68/82 (82%) Frame = +1 Query: 7 RRKQDDKNLEILRELISLNGNKYCLDCNQRGPTYVNTTIGSFVCSKCSGMLRGLTPPHRV 186 R+KQD+KNL+ILR+L S NK C DC QRGPTYVN TIGSFVC+ CSG+LRGL PP RV Sbjct: 5 RKKQDEKNLKILRDLASQQHNKKCFDCGQRGPTYVNMTIGSFVCTSCSGILRGLNPPQRV 64 Query: 187 KSISMATFTPEEIEFIKSRGND 252 KSISM +FTP+EIE+++ GN+ Sbjct: 65 KSISMTSFTPQEIEYLQGAGNE 86 Score = 42.3 bits (95), Expect = 4e-04 Identities = 17/41 (41%), Positives = 28/41 (68%), Gaps = 3/41 (7%) Frame = +3 Query: 252 LCRLVWLGLYDGESI---NFTDEQSVRDFMLDKYEKKRYYL 365 +C+ WLGL++ + DEQ V+DFM+ KYE++R+Y+ Sbjct: 87 VCKKTWLGLWNSANNPEPESRDEQKVKDFMIQKYERRRWYI 127 >SB_20359| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 4700 Score = 59.3 bits (137), Expect = 3e-09 Identities = 29/78 (37%), Positives = 43/78 (55%), Gaps = 1/78 (1%) Frame = +1 Query: 22 DKNLEILRELISLNGNKYCLDCNQRGPTYVNTTIGSFVCSKCSGMLRGL-TPPHRVKSIS 198 +KN L EL GN C DC + P + + + G F+C CSG+ R L T VKS+ Sbjct: 2 EKNRNALLELAKRPGNNTCADCGAKHPEWASASKGIFICITCSGVHRNLGTQISVVKSLR 61 Query: 199 MATFTPEEIEFIKSRGND 252 + T+T E ++F+ GN+ Sbjct: 62 LDTWTDERLQFMIENGNE 79 >SB_30371| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 955 Score = 56.4 bits (130), Expect = 2e-08 Identities = 26/80 (32%), Positives = 47/80 (58%), Gaps = 1/80 (1%) Frame = +1 Query: 13 KQDDKNLEILRELISLNGNKYCLDCNQRGPTYVNTTIGSFVCSKCSGMLRGL-TPPHRVK 189 ++++ L I++++ L GN C DC + PT+++T +G C +CSG+ RG+ RV+ Sbjct: 80 EKNELRLSIVKQVQRLPGNDTCADCTSKDPTWLSTNLGVLTCIECSGVHRGMGVHVSRVQ 139 Query: 190 SISMATFTPEEIEFIKSRGN 249 SI++ E+ K+ GN Sbjct: 140 SITLDNIGTAELLLAKAIGN 159 >SB_17655| Best HMM Match : ArfGap (HMM E-Value=0.015) Length = 401 Score = 29.1 bits (62), Expect = 3.6 Identities = 11/32 (34%), Positives = 18/32 (56%) Frame = +1 Query: 4 NRRKQDDKNLEILRELISLNGNKYCLDCNQRG 99 N+ + + N IL +++ NKYC DC +G Sbjct: 8 NKDNKQNANQAILVDMLKEEKNKYCADCAAKG 39 >SB_30518| Best HMM Match : FYVE (HMM E-Value=1.2e-18) Length = 447 Score = 28.7 bits (61), Expect = 4.8 Identities = 17/54 (31%), Positives = 21/54 (38%) Frame = +1 Query: 70 KYCLDCNQRGPTYVNTTIGSFVCSKCSGMLRGLTPPHRVKSISMATFTPEEIEF 231 K C+ C R T C KC G+ G RV +S+ P IEF Sbjct: 385 KTCMACKTR----FTTVRRRHHCRKCGGVFCGACSSKRVPILSLGYSAPNSIEF 434 >SB_8981| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1726 Score = 28.7 bits (61), Expect = 4.8 Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 1/29 (3%) Frame = +1 Query: 115 TTIGSFVCSKCSGMLRGLTPP-HRVKSIS 198 TTIGS + +G G+TPP HR+K +S Sbjct: 841 TTIGSENIPRLTGSCGGVTPPIHRIKFVS 869 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 18,001,320 Number of Sequences: 59808 Number of extensions: 349713 Number of successful extensions: 885 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 807 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 883 length of database: 16,821,457 effective HSP length: 80 effective length of database: 12,036,817 effective search space used: 1841633001 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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