Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0493
(701 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z93785-1|CAB07858.1| 495|Caenorhabditis elegans Hypothetical pr... 60 2e-09
Z75711-5|CAB00036.1| 423|Caenorhabditis elegans Hypothetical pr... 48 9e-06
U23486-3|AAL38955.1| 529|Caenorhabditis elegans Hypothetical pr... 44 8e-05
AL023828-18|CAA19462.2| 742|Caenorhabditis elegans Hypothetical... 43 2e-04
AL023828-17|CAA19463.2| 826|Caenorhabditis elegans Hypothetical... 43 2e-04
AJ132699-1|CAA10735.1| 742|Caenorhabditis elegans centaurin bet... 43 2e-04
AJ132698-1|CAA10734.1| 826|Caenorhabditis elegans centaurin bet... 43 2e-04
AL031633-14|CAA21032.1| 903|Caenorhabditis elegans Hypothetical... 41 0.001
AL031633-13|CAA21027.1| 951|Caenorhabditis elegans Hypothetical... 41 0.001
AL031633-12|CAA21026.2| 1107|Caenorhabditis elegans Hypothetical... 41 0.001
AJ132701-1|CAA10737.1| 1107|Caenorhabditis elegans centaurin gam... 41 0.001
AJ132700-1|CAA10736.1| 952|Caenorhabditis elegans centaurin gam... 41 0.001
AF003384-2|AAL08040.1| 428|Caenorhabditis elegans Acyltransfera... 30 1.4
AF003384-1|AAK71374.2| 415|Caenorhabditis elegans Acyltransfera... 30 1.4
Z82259-1|CAB05126.3| 437|Caenorhabditis elegans Hypothetical pr... 28 5.6
Z81481-8|CAB63438.2| 343|Caenorhabditis elegans Hypothetical pr... 28 5.6
AY305849-1|AAR11993.1| 437|Caenorhabditis elegans nuclear recep... 28 5.6
AF332207-1|AAK17978.1| 378|Caenorhabditis elegans nuclear recep... 28 7.4
>Z93785-1|CAB07858.1| 495|Caenorhabditis elegans Hypothetical
protein W09D10.1 protein.
Length = 495
Score = 59.7 bits (138), Expect = 2e-09
Identities = 24/83 (28%), Positives = 52/83 (62%), Gaps = 2/83 (2%)
Frame = +1
Query: 10 RKQDDKNLE-ILRELISLNGNKYCLDCNQRGPTYVNTTIGSFVCSKCSGMLRGL-TPPHR 183
+K++ + L+ L +++ NKYC DC + P + +G F+C +C+G+ R L +
Sbjct: 9 KKEEQERLQGFLLDMLKEEENKYCADCQAKTPRWAAWNLGVFICIRCAGIHRNLGVHISK 68
Query: 184 VKSISMATFTPEEIEFIKSRGND 252
V+S+++ ++TPE+++ ++ GN+
Sbjct: 69 VRSVNLDSWTPEQVQTMRVMGNE 91
>Z75711-5|CAB00036.1| 423|Caenorhabditis elegans Hypothetical
protein K02B12.7 protein.
Length = 423
Score = 47.6 bits (108), Expect = 9e-06
Identities = 22/72 (30%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Frame = +1
Query: 37 ILRELISLNGNKYCLDCNQRGPTYVNTTIGSFVCSKCSGMLRGL-TPPHRVKSISMATFT 213
+L+EL + N +C +C P +V+ + G ++C +CSG+ R L V+S++M +
Sbjct: 9 VLKELRPCDDNNFCFECEANNPQWVSVSYGIWICLECSGIHRSLGVHLSFVRSVTMDKWK 68
Query: 214 PEEIEFIKSRGN 249
E+ +K+ GN
Sbjct: 69 DIELAKMKAGGN 80
>U23486-3|AAL38955.1| 529|Caenorhabditis elegans Hypothetical
protein F07F6.4 protein.
Length = 529
Score = 44.4 bits (100), Expect = 8e-05
Identities = 18/43 (41%), Positives = 25/43 (58%)
Frame = +1
Query: 40 LRELISLNGNKYCLDCNQRGPTYVNTTIGSFVCSKCSGMLRGL 168
+R++ +L NK C DC R PT+ T G F+C CS + R L
Sbjct: 16 MRKMRALPPNKLCFDCGARNPTWCTVTYGVFLCIDCSAVHRNL 58
>AL023828-18|CAA19462.2| 742|Caenorhabditis elegans Hypothetical
protein Y17G7B.15b protein.
Length = 742
Score = 42.7 bits (96), Expect = 2e-04
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Frame = +1
Query: 64 GNKYCLDCNQRGPTYVNTTIGSFVCSKCSGMLRGL-TPPHRVKSISMATFTPEEIEFIKS 240
GN+ C DC P +V+ +G +C +CSG R L +V+S+ M + E + + +
Sbjct: 374 GNEVCADCGSPAPKWVSINLGVVLCIECSGAHRSLGVQTSKVRSLCMDSIDNELRDVLLA 433
Query: 241 RGNDYVD 261
GN V+
Sbjct: 434 LGNRQVN 440
>AL023828-17|CAA19463.2| 826|Caenorhabditis elegans Hypothetical
protein Y17G7B.15a protein.
Length = 826
Score = 42.7 bits (96), Expect = 2e-04
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Frame = +1
Query: 64 GNKYCLDCNQRGPTYVNTTIGSFVCSKCSGMLRGL-TPPHRVKSISMATFTPEEIEFIKS 240
GN+ C DC P +V+ +G +C +CSG R L +V+S+ M + E + + +
Sbjct: 458 GNEVCADCGSPAPKWVSINLGVVLCIECSGAHRSLGVQTSKVRSLCMDSIDNELRDVLLA 517
Query: 241 RGNDYVD 261
GN V+
Sbjct: 518 LGNRQVN 524
>AJ132699-1|CAA10735.1| 742|Caenorhabditis elegans centaurin beta
1B protein.
Length = 742
Score = 42.7 bits (96), Expect = 2e-04
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Frame = +1
Query: 64 GNKYCLDCNQRGPTYVNTTIGSFVCSKCSGMLRGL-TPPHRVKSISMATFTPEEIEFIKS 240
GN+ C DC P +V+ +G +C +CSG R L +V+S+ M + E + + +
Sbjct: 374 GNEVCADCGSPAPKWVSINLGVVLCIECSGAHRSLGVQTSKVRSLCMDSIDNELRDVLLA 433
Query: 241 RGNDYVD 261
GN V+
Sbjct: 434 LGNRQVN 440
>AJ132698-1|CAA10734.1| 826|Caenorhabditis elegans centaurin beta
1A protein.
Length = 826
Score = 42.7 bits (96), Expect = 2e-04
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Frame = +1
Query: 64 GNKYCLDCNQRGPTYVNTTIGSFVCSKCSGMLRGL-TPPHRVKSISMATFTPEEIEFIKS 240
GN+ C DC P +V+ +G +C +CSG R L +V+S+ M + E + + +
Sbjct: 458 GNEVCADCGSPAPKWVSINLGVVLCIECSGAHRSLGVQTSKVRSLCMDSIDNELRDVLLA 517
Query: 241 RGNDYVD 261
GN V+
Sbjct: 518 LGNRQVN 524
>AL031633-14|CAA21032.1| 903|Caenorhabditis elegans Hypothetical
protein Y39A1A.15c protein.
Length = 903
Score = 40.7 bits (91), Expect = 0.001
Identities = 19/69 (27%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Frame = +1
Query: 49 LISLNGNKYCLDCNQRGPTYVNTTIGSFVCSKCSGMLRGL-TPPHRVKSISMATFTPEEI 225
L S+ GN C DC + + +G +C +CSG+ R L + +V+ + + + E +
Sbjct: 624 LRSIPGNGRCADCGNPSSEWASINLGIIICIECSGIHRNLGSHISKVRGLELDQWPVEHL 683
Query: 226 EFIKSRGND 252
+++ GND
Sbjct: 684 AVMQAIGND 692
>AL031633-13|CAA21027.1| 951|Caenorhabditis elegans Hypothetical
protein Y39A1A.15b protein.
Length = 951
Score = 40.7 bits (91), Expect = 0.001
Identities = 19/69 (27%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Frame = +1
Query: 49 LISLNGNKYCLDCNQRGPTYVNTTIGSFVCSKCSGMLRGL-TPPHRVKSISMATFTPEEI 225
L S+ GN C DC + + +G +C +CSG+ R L + +V+ + + + E +
Sbjct: 672 LRSIPGNGRCADCGNPSSEWASINLGIIICIECSGIHRNLGSHISKVRGLELDQWPVEHL 731
Query: 226 EFIKSRGND 252
+++ GND
Sbjct: 732 AVMQAIGND 740
>AL031633-12|CAA21026.2| 1107|Caenorhabditis elegans Hypothetical
protein Y39A1A.15a protein.
Length = 1107
Score = 40.7 bits (91), Expect = 0.001
Identities = 19/69 (27%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Frame = +1
Query: 49 LISLNGNKYCLDCNQRGPTYVNTTIGSFVCSKCSGMLRGL-TPPHRVKSISMATFTPEEI 225
L S+ GN C DC + + +G +C +CSG+ R L + +V+ + + + E +
Sbjct: 828 LRSIPGNGRCADCGNPSSEWASINLGIIICIECSGIHRNLGSHISKVRGLELDQWPVEHL 887
Query: 226 EFIKSRGND 252
+++ GND
Sbjct: 888 AVMQAIGND 896
>AJ132701-1|CAA10737.1| 1107|Caenorhabditis elegans centaurin gamma 1B
protein.
Length = 1107
Score = 40.7 bits (91), Expect = 0.001
Identities = 19/69 (27%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Frame = +1
Query: 49 LISLNGNKYCLDCNQRGPTYVNTTIGSFVCSKCSGMLRGL-TPPHRVKSISMATFTPEEI 225
L S+ GN C DC + + +G +C +CSG+ R L + +V+ + + + E +
Sbjct: 828 LRSIPGNGRCADCGNPSSEWASINLGIIICIECSGIHRNLGSHISKVRGLELDQWPVEHL 887
Query: 226 EFIKSRGND 252
+++ GND
Sbjct: 888 AVMQAIGND 896
>AJ132700-1|CAA10736.1| 952|Caenorhabditis elegans centaurin gamma
1A protein.
Length = 952
Score = 40.7 bits (91), Expect = 0.001
Identities = 19/69 (27%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Frame = +1
Query: 49 LISLNGNKYCLDCNQRGPTYVNTTIGSFVCSKCSGMLRGL-TPPHRVKSISMATFTPEEI 225
L S+ GN C DC + + +G +C +CSG+ R L + +V+ + + + E +
Sbjct: 673 LRSIPGNGRCADCGNPSSEWASINLGIIICIECSGIHRNLGSHISKVRGLELDQWPVEHL 732
Query: 226 EFIKSRGND 252
+++ GND
Sbjct: 733 AVMQAIGND 741
>AF003384-2|AAL08040.1| 428|Caenorhabditis elegans
Acyltransferase-like protein 14,isoform b protein.
Length = 428
Score = 30.3 bits (65), Expect = 1.4
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +3
Query: 243 RERLCRLVWLGLYDGESINFTDEQSVRDFMLDKYEKK 353
RE+ V +YD + F DE+ +RD+M + Y++K
Sbjct: 328 REKCDIAVNYKIYDAAEVPFEDEEKLRDWMYEVYKEK 364
>AF003384-1|AAK71374.2| 415|Caenorhabditis elegans
Acyltransferase-like protein 14,isoform a protein.
Length = 415
Score = 30.3 bits (65), Expect = 1.4
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +3
Query: 243 RERLCRLVWLGLYDGESINFTDEQSVRDFMLDKYEKK 353
RE+ V +YD + F DE+ +RD+M + Y++K
Sbjct: 315 REKCDIAVNYKIYDAAEVPFEDEEKLRDWMYEVYKEK 351
>Z82259-1|CAB05126.3| 437|Caenorhabditis elegans Hypothetical
protein C28D4.1 protein.
Length = 437
Score = 28.3 bits (60), Expect = 5.6
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = +3
Query: 93 KRTYLCEYNNRIICLFKMFRNATR 164
KRTY C +NN I FK +RN R
Sbjct: 55 KRTYKCSFNNECIIEFK-YRNRCR 77
>Z81481-8|CAB63438.2| 343|Caenorhabditis elegans Hypothetical
protein C38D9.9 protein.
Length = 343
Score = 28.3 bits (60), Expect = 5.6
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = -3
Query: 543 KLFTNFAV*IAFYWMHFSKIAAKSISEVLQRLLHFQPWLLT 421
+LF NF+ + Y F + A+ + E+L ++ +F+ W LT
Sbjct: 256 QLFANFSK-LKAYLKFFREDHARDLKEILPKIPNFKSWTLT 295
>AY305849-1|AAR11993.1| 437|Caenorhabditis elegans nuclear receptor
NHR-100 protein.
Length = 437
Score = 28.3 bits (60), Expect = 5.6
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = +3
Query: 93 KRTYLCEYNNRIICLFKMFRNATR 164
KRTY C +NN I FK +RN R
Sbjct: 55 KRTYKCSFNNECIIEFK-YRNRCR 77
>AF332207-1|AAK17978.1| 378|Caenorhabditis elegans nuclear receptor
NHR-57 protein.
Length = 378
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/43 (30%), Positives = 19/43 (44%)
Frame = +1
Query: 43 RELISLNGNKYCLDCNQRGPTYVNTTIGSFVCSKCSGMLRGLT 171
+E++ KYC C+Q G Y G+ C C+ R T
Sbjct: 3 QEMLVARERKYCSVCHQLGDGY---HFGAIACKACAAFFRRTT 42
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,670,367
Number of Sequences: 27780
Number of extensions: 265485
Number of successful extensions: 731
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 693
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 730
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -