BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e40h0493 (701 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At4g13350.2 68417.m02088 human Rev interacting-like protein-rela... 93 2e-19 At4g13350.1 68417.m02087 human Rev interacting-like protein-rela... 93 2e-19 At1g08680.2 68414.m00965 ARF GAP-like zinc finger-containing pro... 82 3e-16 At1g08680.1 68414.m00964 ARF GAP-like zinc finger-containing pro... 82 3e-16 At5g54310.1 68418.m06764 ARF GAP-like zinc finger-containing pro... 65 5e-11 At3g17660.1 68416.m02255 human Rev interacting-like family prote... 63 2e-10 At4g17890.1 68417.m02666 human Rev interacting-like family prote... 56 2e-08 At3g07940.1 68416.m00971 zinc finger and C2 domain protein, puta... 56 3e-08 At5g46750.1 68418.m05759 human Rev interacting-like family prote... 54 7e-08 At3g53710.1 68416.m05933 ARF GAP-like zinc finger-containing pro... 54 9e-08 At2g37550.1 68415.m04605 arabidopsis pde1 suppressor 1 protein (... 54 1e-07 At2g35210.2 68415.m04318 human Rev interacting-like family prote... 52 3e-07 At2g35210.1 68415.m04319 human Rev interacting-like family prote... 52 3e-07 At4g05330.1 68417.m00815 zinc finger and C2 domain protein, puta... 50 1e-06 At4g21160.4 68417.m03061 zinc finger and C2 domain protein (ZAC)... 49 3e-06 At4g21160.3 68417.m03060 zinc finger and C2 domain protein (ZAC)... 49 3e-06 At4g21160.2 68417.m03059 zinc finger and C2 domain protein (ZAC)... 49 3e-06 At4g21160.1 68417.m03058 zinc finger and C2 domain protein (ZAC)... 49 3e-06 At1g60860.1 68414.m06851 ARF GTPase-activating domain-containing... 44 7e-05 At5g61980.1 68418.m07779 ARF GTPase-activating domain-containing... 44 1e-04 At1g10870.1 68414.m01249 ARF GTPase-activating domain-containing... 42 3e-04 At5g13300.1 68418.m01528 ARF GTPase-activating domain-containing... 42 4e-04 At4g32630.1 68417.m04645 hypothetical protein 33 0.18 At5g39230.1 68418.m04751 transcription initiation factor-related... 29 3.0 At3g09370.1 68416.m01111 myb family transcription factor (MYB3R3... 28 6.9 At2g41630.1 68415.m05144 transcription initiation factor IIB-1 /... 27 9.1 >At4g13350.2 68417.m02088 human Rev interacting-like protein-related / hRIP protein-related similar to SP|P52594 Nucleoporin-like protein RIP (HIV-1 Rev-binding protein) (Rev interacting protein) (Rev/Rex activation domain-binding protein) {Homo sapiens}; contains Pfam profile PF01412: Putative GTPase activating protein for Arf Length = 602 Score = 92.7 bits (220), Expect = 2e-19 Identities = 44/85 (51%), Positives = 58/85 (68%) Frame = +1 Query: 1 ANRRKQDDKNLEILRELISLNGNKYCLDCNQRGPTYVNTTIGSFVCSKCSGMLRGLTPPH 180 A R K+D+KN +I+R L+ L NK C++CN GP YV TT +FVC+ CSG+ R T H Sbjct: 2 AGRVKEDEKNEKIIRSLLKLPENKRCINCNSLGPQYVCTTFWTFVCTNCSGIHREFT--H 59 Query: 181 RVKSISMATFTPEEIEFIKSRGNDY 255 RVKSISMA FT +E+ +K GN + Sbjct: 60 RVKSISMAKFTSQEVTALKEGGNQH 84 >At4g13350.1 68417.m02087 human Rev interacting-like protein-related / hRIP protein-related similar to SP|P52594 Nucleoporin-like protein RIP (HIV-1 Rev-binding protein) (Rev interacting protein) (Rev/Rex activation domain-binding protein) {Homo sapiens}; contains Pfam profile PF01412: Putative GTPase activating protein for Arf Length = 602 Score = 92.7 bits (220), Expect = 2e-19 Identities = 44/85 (51%), Positives = 58/85 (68%) Frame = +1 Query: 1 ANRRKQDDKNLEILRELISLNGNKYCLDCNQRGPTYVNTTIGSFVCSKCSGMLRGLTPPH 180 A R K+D+KN +I+R L+ L NK C++CN GP YV TT +FVC+ CSG+ R T H Sbjct: 2 AGRVKEDEKNEKIIRSLLKLPENKRCINCNSLGPQYVCTTFWTFVCTNCSGIHREFT--H 59 Query: 181 RVKSISMATFTPEEIEFIKSRGNDY 255 RVKSISMA FT +E+ +K GN + Sbjct: 60 RVKSISMAKFTSQEVTALKEGGNQH 84 >At1g08680.2 68414.m00965 ARF GAP-like zinc finger-containing protein ZiGA4 (ZIGA4) nearly identical to ARF GAP-like zinc finger-containing protein ZiGA4 GI:10441354 from [Arabidopsis thaliana]; contains InterPro accession IPR001164: Human Rev interacting-like protein (hRIP) Length = 648 Score = 82.2 bits (194), Expect = 3e-16 Identities = 36/80 (45%), Positives = 57/80 (71%) Frame = +1 Query: 10 RKQDDKNLEILRELISLNGNKYCLDCNQRGPTYVNTTIGSFVCSKCSGMLRGLTPPHRVK 189 ++++++N +I+R L+ L N+ C++CN GP YV TT +FVC CSG+ R T HRVK Sbjct: 5 KREEERNEKIIRGLMKLPPNRRCINCNSLGPQYVCTTFWTFVCMACSGIHREFT--HRVK 62 Query: 190 SISMATFTPEEIEFIKSRGN 249 S+SM+ FT +E+E +++ GN Sbjct: 63 SVSMSKFTSKEVEVLQNGGN 82 >At1g08680.1 68414.m00964 ARF GAP-like zinc finger-containing protein ZiGA4 (ZIGA4) nearly identical to ARF GAP-like zinc finger-containing protein ZiGA4 GI:10441354 from [Arabidopsis thaliana]; contains InterPro accession IPR001164: Human Rev interacting-like protein (hRIP) Length = 649 Score = 82.2 bits (194), Expect = 3e-16 Identities = 36/80 (45%), Positives = 57/80 (71%) Frame = +1 Query: 10 RKQDDKNLEILRELISLNGNKYCLDCNQRGPTYVNTTIGSFVCSKCSGMLRGLTPPHRVK 189 ++++++N +I+R L+ L N+ C++CN GP YV TT +FVC CSG+ R T HRVK Sbjct: 5 KREEERNEKIIRGLMKLPPNRRCINCNSLGPQYVCTTFWTFVCMACSGIHREFT--HRVK 62 Query: 190 SISMATFTPEEIEFIKSRGN 249 S+SM+ FT +E+E +++ GN Sbjct: 63 SVSMSKFTSKEVEVLQNGGN 82 >At5g54310.1 68418.m06764 ARF GAP-like zinc finger-containing protein ZIGA3 (ZIGA3) nearly identical to ARF GAP-like zinc finger-containing protein ZIGA3 GI:10441352 from [Arabidopsis thaliana]; contains InterPro accession IPR001164: Human Rev interacting-like protein (hRIP) Length = 483 Score = 64.9 bits (151), Expect = 5e-11 Identities = 31/86 (36%), Positives = 53/86 (61%), Gaps = 2/86 (2%) Frame = +1 Query: 1 ANRRKQ-DDKNLEILRELISLNGNKYCLDCNQRGPTYVNTTIGSFVCSKCSGMLRGL-TP 174 AN K+ + ++ +IL L+ N+ C DC +GP + + +G F+C +CSG+ R L Sbjct: 5 ANVSKELNARHRKILEGLLKHPENRECADCKTKGPRWASVNLGIFICMQCSGIHRSLGVH 64 Query: 175 PHRVKSISMATFTPEEIEFIKSRGND 252 +V+S ++ T+ PE++ FI+S GND Sbjct: 65 ISKVRSATLDTWLPEQVAFIQSMGND 90 >At3g17660.1 68416.m02255 human Rev interacting-like family protein / hRIP family protein similar to ARF GAP-like zinc finger-containing protein ZIGA3 GI:10441352 from [Arabidopsis thaliana]; contains InterPro accession IPR001164: Human Rev interacting-like protein (hRIP) Length = 117 Score = 62.9 bits (146), Expect = 2e-10 Identities = 27/76 (35%), Positives = 47/76 (61%), Gaps = 1/76 (1%) Frame = +1 Query: 25 KNLEILRELISLNGNKYCLDCNQRGPTYVNTTIGSFVCSKCSGMLRGL-TPPHRVKSISM 201 K+ +IL L+ N+ C DC + P + + +G F+C +CSG+ R L +V+SI++ Sbjct: 14 KHSKILEALLKHPDNRECADCRSKAPRWASVNLGIFICMQCSGIHRSLGVHISQVRSITL 73 Query: 202 ATFTPEEIEFIKSRGN 249 T+ P+++ F+KS GN Sbjct: 74 DTWLPDQVAFMKSTGN 89 >At4g17890.1 68417.m02666 human Rev interacting-like family protein / hRIP family protein contains InterPro accession IPR001164: Human Rev interacting-like protein (hRIP) Length = 413 Score = 56.4 bits (130), Expect = 2e-08 Identities = 28/83 (33%), Positives = 48/83 (57%), Gaps = 1/83 (1%) Frame = +1 Query: 22 DKNLEILRELISLNGNKYCLDCNQRGPTYVNTTIGSFVCSKCSGMLRGL-TPPHRVKSIS 198 DKN+ + R+L S + NK C DC+ + PT+ + T G F+C CS R L V+S + Sbjct: 11 DKNI-VFRKLKSKSENKVCFDCSAKNPTWASVTYGIFLCIDCSATHRNLGVHISFVRSTN 69 Query: 199 MATFTPEEIEFIKSRGNDYVDLF 267 + +++PE++ + GN+ +F Sbjct: 70 LDSWSPEQLRTMMFGGNNRAQVF 92 >At3g07940.1 68416.m00971 zinc finger and C2 domain protein, putative similar to zinc finger and C2 domain protein GI:9957238 from [Arabidopsis thaliana];contains Pfam profile: PF01412 Putative GTP-ase activating protein for Arf Length = 385 Score = 55.6 bits (128), Expect = 3e-08 Identities = 24/72 (33%), Positives = 42/72 (58%), Gaps = 1/72 (1%) Frame = +1 Query: 40 LRELISLNGNKYCLDCNQRGPTYVNTTIGSFVCSKCSGMLRGL-TPPHRVKSISMATFTP 216 L +L+ GNKYC DC P +V+ ++G F+C KCSG+ R L +V S+ + +T Sbjct: 50 LEKLLKQPGNKYCADCGSPEPKWVSLSLGVFICIKCSGVHRSLGVHISKVLSVKLDEWTD 109 Query: 217 EEIEFIKSRGND 252 ++++ + G + Sbjct: 110 DQVDMLVGYGGN 121 >At5g46750.1 68418.m05759 human Rev interacting-like family protein / hRIP family protein contains Pfam profile PF01412: Putative GTP-ase activating protein for Arf Length = 402 Score = 54.4 bits (125), Expect = 7e-08 Identities = 27/83 (32%), Positives = 48/83 (57%), Gaps = 1/83 (1%) Frame = +1 Query: 22 DKNLEILRELISLNGNKYCLDCNQRGPTYVNTTIGSFVCSKCSGMLRGL-TPPHRVKSIS 198 DKN+ + R+L S + NK C DC+ + PT+ + G F+C CS + R L V+S + Sbjct: 8 DKNV-VFRKLKSKSENKVCFDCSAKNPTWASVPYGIFLCIDCSAVHRSLGVHISFVRSTN 66 Query: 199 MATFTPEEIEFIKSRGNDYVDLF 267 + +++PE++ + GN+ +F Sbjct: 67 LDSWSPEQLRTMMFGGNNRAQVF 89 >At3g53710.1 68416.m05933 ARF GAP-like zinc finger-containing protein ZIGA2 (ZIGA2) nearly identical to ARF GAP-like zinc finger-containing protein ZIGA2 from GI:10441356 [Arabidopsis thaliana]; contains InterPro accession IPR001164: Human Rev interacting-like protein (hRIP) Length = 459 Score = 54.0 bits (124), Expect = 9e-08 Identities = 27/77 (35%), Positives = 48/77 (62%), Gaps = 1/77 (1%) Frame = +1 Query: 40 LRELISLNGNKYCLDCNQRGPTYVNTTIGSFVCSKCSGMLRGL-TPPHRVKSISMATFTP 216 LR L S NK C+DC Q+ P + + + G F+C +CSG RGL V+S++M +++ Sbjct: 7 LRTLQSQPENKVCVDCAQKNPQWASVSYGIFMCLECSGKHRGLGVHISFVRSVTMDSWSA 66 Query: 217 EEIEFIKSRGNDYVDLF 267 +I+ +++ GN+ ++ F Sbjct: 67 IQIKKMEAGGNERLNKF 83 >At2g37550.1 68415.m04605 arabidopsis pde1 suppressor 1 protein (ASP1) identical to arabidopsis pde1 suppressor 1 (Asp1) from GI:4519792 [Arabidopsis thaliana]; contains InterPro accession IPR001164: Human Rev interacting-like protein (hRIP) Length = 456 Score = 53.6 bits (123), Expect = 1e-07 Identities = 27/77 (35%), Positives = 48/77 (62%), Gaps = 1/77 (1%) Frame = +1 Query: 40 LRELISLNGNKYCLDCNQRGPTYVNTTIGSFVCSKCSGMLRGL-TPPHRVKSISMATFTP 216 LR L S NK C+DC+Q+ P + + + G F+C +CSG RGL V+S++M +++ Sbjct: 7 LRTLQSQPENKVCVDCSQKNPQWASISYGIFMCLECSGKHRGLGVHISFVRSVTMDSWSE 66 Query: 217 EEIEFIKSRGNDYVDLF 267 +I+ + + GN+ ++ F Sbjct: 67 IQIKKMDAGGNERLNNF 83 >At2g35210.2 68415.m04318 human Rev interacting-like family protein / hRIP family protein similar to ARFGAP1 protein GI:7211442 from [Homo sapiens]; contains InterPro accession IPR001164: Human Rev interacting-like protein (hRIP) Length = 371 Score = 52.4 bits (120), Expect = 3e-07 Identities = 25/84 (29%), Positives = 49/84 (58%), Gaps = 1/84 (1%) Frame = +1 Query: 19 DDKNLEILRELISLNGNKYCLDCNQRGPTYVNTTIGSFVCSKCSGMLRGL-TPPHRVKSI 195 +DK + + ++L + + NK C DCN + PT+ + T G F+C CS + R L V+S Sbjct: 7 NDK-ISVFKKLKAKSDNKICFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRST 65 Query: 196 SMATFTPEEIEFIKSRGNDYVDLF 267 ++ +++ E+++ + GN+ +F Sbjct: 66 NLDSWSSEQLKMMIYGGNNRAQVF 89 >At2g35210.1 68415.m04319 human Rev interacting-like family protein / hRIP family protein similar to ARFGAP1 protein GI:7211442 from [Homo sapiens]; contains InterPro accession IPR001164: Human Rev interacting-like protein (hRIP) Length = 395 Score = 52.4 bits (120), Expect = 3e-07 Identities = 25/84 (29%), Positives = 49/84 (58%), Gaps = 1/84 (1%) Frame = +1 Query: 19 DDKNLEILRELISLNGNKYCLDCNQRGPTYVNTTIGSFVCSKCSGMLRGL-TPPHRVKSI 195 +DK + + ++L + + NK C DCN + PT+ + T G F+C CS + R L V+S Sbjct: 7 NDK-ISVFKKLKAKSDNKICFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRST 65 Query: 196 SMATFTPEEIEFIKSRGNDYVDLF 267 ++ +++ E+++ + GN+ +F Sbjct: 66 NLDSWSSEQLKMMIYGGNNRAQVF 89 >At4g05330.1 68417.m00815 zinc finger and C2 domain protein, putative similar to zinc finger and C2 domain protein GI:9957238 from [Arabidopsis thaliana] Length = 336 Score = 50.0 bits (114), Expect = 1e-06 Identities = 24/72 (33%), Positives = 42/72 (58%), Gaps = 2/72 (2%) Frame = +1 Query: 40 LRELISLNGNKYCLDCNQRGPTYVNTTIGSFVCSKCSGMLRGL-TPPHRVKSISMATFTP 216 +R+L++ N+ C DC P + + IG F+C KC G+ R L T +V S+++ ++ Sbjct: 18 IRDLLNQPDNRVCADCGASDPKWASANIGVFICLKCCGVHRSLGTHISKVLSVTLDEWSD 77 Query: 217 EEIE-FIKSRGN 249 EE++ I+ GN Sbjct: 78 EEVDSMIEIGGN 89 >At4g21160.4 68417.m03061 zinc finger and C2 domain protein (ZAC) identical to zinc finger and C2 domain protein GI:9957238 from [Arabidopsis thaliana] Length = 337 Score = 49.2 bits (112), Expect = 3e-06 Identities = 23/72 (31%), Positives = 43/72 (59%), Gaps = 2/72 (2%) Frame = +1 Query: 40 LRELISLNGNKYCLDCNQRGPTYVNTTIGSFVCSKCSGMLRGL-TPPHRVKSISMATFTP 216 +R+L++ + N+ C DC P + + IG F+C KC G+ R L + +V S+++ ++ Sbjct: 18 IRDLLTQSDNRVCADCGAPDPKWASANIGVFICLKCCGVHRSLGSHISKVLSVTLDEWSD 77 Query: 217 EEIE-FIKSRGN 249 EE++ I+ GN Sbjct: 78 EEVDSMIEIGGN 89 >At4g21160.3 68417.m03060 zinc finger and C2 domain protein (ZAC) identical to zinc finger and C2 domain protein GI:9957238 from [Arabidopsis thaliana] Length = 337 Score = 49.2 bits (112), Expect = 3e-06 Identities = 23/72 (31%), Positives = 43/72 (59%), Gaps = 2/72 (2%) Frame = +1 Query: 40 LRELISLNGNKYCLDCNQRGPTYVNTTIGSFVCSKCSGMLRGL-TPPHRVKSISMATFTP 216 +R+L++ + N+ C DC P + + IG F+C KC G+ R L + +V S+++ ++ Sbjct: 18 IRDLLTQSDNRVCADCGAPDPKWASANIGVFICLKCCGVHRSLGSHISKVLSVTLDEWSD 77 Query: 217 EEIE-FIKSRGN 249 EE++ I+ GN Sbjct: 78 EEVDSMIEIGGN 89 >At4g21160.2 68417.m03059 zinc finger and C2 domain protein (ZAC) identical to zinc finger and C2 domain protein GI:9957238 from [Arabidopsis thaliana] Length = 337 Score = 49.2 bits (112), Expect = 3e-06 Identities = 23/72 (31%), Positives = 43/72 (59%), Gaps = 2/72 (2%) Frame = +1 Query: 40 LRELISLNGNKYCLDCNQRGPTYVNTTIGSFVCSKCSGMLRGL-TPPHRVKSISMATFTP 216 +R+L++ + N+ C DC P + + IG F+C KC G+ R L + +V S+++ ++ Sbjct: 18 IRDLLTQSDNRVCADCGAPDPKWASANIGVFICLKCCGVHRSLGSHISKVLSVTLDEWSD 77 Query: 217 EEIE-FIKSRGN 249 EE++ I+ GN Sbjct: 78 EEVDSMIEIGGN 89 >At4g21160.1 68417.m03058 zinc finger and C2 domain protein (ZAC) identical to zinc finger and C2 domain protein GI:9957238 from [Arabidopsis thaliana] Length = 337 Score = 49.2 bits (112), Expect = 3e-06 Identities = 23/72 (31%), Positives = 43/72 (59%), Gaps = 2/72 (2%) Frame = +1 Query: 40 LRELISLNGNKYCLDCNQRGPTYVNTTIGSFVCSKCSGMLRGL-TPPHRVKSISMATFTP 216 +R+L++ + N+ C DC P + + IG F+C KC G+ R L + +V S+++ ++ Sbjct: 18 IRDLLTQSDNRVCADCGAPDPKWASANIGVFICLKCCGVHRSLGSHISKVLSVTLDEWSD 77 Query: 217 EEIE-FIKSRGN 249 EE++ I+ GN Sbjct: 78 EEVDSMIEIGGN 89 >At1g60860.1 68414.m06851 ARF GTPase-activating domain-containing protein Length = 776 Score = 44.4 bits (100), Expect = 7e-05 Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 3/81 (3%) Frame = +1 Query: 22 DKNLEILRELISLNGNKYCLDCNQRGPTYVNTTIGSFVCSKCSGMLRGL-TPPHRVKSIS 198 D L ILRE+ GN C +CN P + + +G +C +CSG+ R L +V+S++ Sbjct: 467 DDVLTILREI---PGNNTCAECNAPDPDWASLNLGVLMCIECSGVHRNLGVHISKVRSLT 523 Query: 199 M--ATFTPEEIEFIKSRGNDY 255 + + P ++ ++ GN Y Sbjct: 524 LDVKVWEPTILDLFRNLGNGY 544 >At5g61980.1 68418.m07779 ARF GTPase-activating domain-containing protein similar to GCN4-complementing protein (GCP1) GI:6465806 from [Arabidopsis thaliana] Length = 850 Score = 44.0 bits (99), Expect = 1e-04 Identities = 23/83 (27%), Positives = 45/83 (54%), Gaps = 3/83 (3%) Frame = +1 Query: 22 DKNLEILRELISLNGNKYCLDCNQRGPTYVNTTIGSFVCSKCSGMLRGL-TPPHRVKSIS 198 +K +++L ++ GN+ C DC P + + +G +C +CSG+ R L +V+S++ Sbjct: 520 EKPIDVLTRVL---GNERCADCGAPEPDWASLNLGVLICIECSGIHRNLGVHISKVRSLT 576 Query: 199 M--ATFTPEEIEFIKSRGNDYVD 261 + + P + +S GN YV+ Sbjct: 577 LDVKVWEPSVLTLFQSLGNVYVN 599 >At1g10870.1 68414.m01249 ARF GTPase-activating domain-containing protein Length = 775 Score = 42.3 bits (95), Expect = 3e-04 Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 3/72 (4%) Frame = +1 Query: 49 LISLNGNKYCLDCNQRGPTYVNTTIGSFVCSKCSGMLRGL-TPPHRVKSISM--ATFTPE 219 L L GN C +CN P + + +G +C +CSG+ R L +V+S+S+ + P Sbjct: 473 LRGLPGNNACAECNAPEPDWASLNLGVLLCIQCSGVHRNLGVHISKVRSLSLDVKVWEPT 532 Query: 220 EIEFIKSRGNDY 255 ++ ++ GN Y Sbjct: 533 ILDLFRNLGNVY 544 >At5g13300.1 68418.m01528 ARF GTPase-activating domain-containing protein similar to GCN4-complementing protein (GCP1) GI:6465806 from [Arabidopsis thaliana] Length = 768 Score = 41.9 bits (94), Expect = 4e-04 Identities = 23/86 (26%), Positives = 45/86 (52%), Gaps = 3/86 (3%) Frame = +1 Query: 13 KQDDKNLEILRELISLNGNKYCLDCNQRGPTYVNTTIGSFVCSKCSGMLRGL-TPPHRVK 189 ++ +K ++ LR++ GN C DC P + + +G VC +CSG+ R L +V+ Sbjct: 439 RKGEKPIDALRKVC---GNDKCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVR 495 Query: 190 SISM--ATFTPEEIEFIKSRGNDYVD 261 S+++ + P I ++ GN + + Sbjct: 496 SLTLDVKVWEPSVISLFQALGNTFAN 521 >At4g32630.1 68417.m04645 hypothetical protein Length = 531 Score = 33.1 bits (72), Expect = 0.18 Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 1/54 (1%) Frame = +1 Query: 13 KQDDKNLEILRELISLNGNKYCLDCNQR-GPTYVNTTIGSFVCSKCSGMLRGLT 171 K+D++ + +R L+ L N+ C++CN G T++ + ++ SG+L LT Sbjct: 2 KEDERTEKAIRSLLKLPENRRCINCNSLVGTTFLADHTVHNMYAQLSGLLSALT 55 >At5g39230.1 68418.m04751 transcription initiation factor-related contains weak similarity to Transcription initiation factor IIB (General transcription factor TFIIB) (Swiss-Prot:Q8W0W3) [Oryza sativa] Length = 119 Score = 29.1 bits (62), Expect = 3.0 Identities = 10/28 (35%), Positives = 17/28 (60%) Frame = +1 Query: 76 CLDCNQRGPTYVNTTIGSFVCSKCSGML 159 CLDC +R T ++ G +C++C +L Sbjct: 6 CLDCKKRTDTVIDYRSGDTICTECGLIL 33 >At3g09370.1 68416.m01111 myb family transcription factor (MYB3R3) contains Pfam profile: Myb DNA-binding proteins; identical to cDNA putative c-myb-like transcription factor (MYB3R3) GI:15375285 Length = 505 Score = 27.9 bits (59), Expect = 6.9 Identities = 13/32 (40%), Positives = 20/32 (62%) Frame = +1 Query: 166 LTPPHRVKSISMATFTPEEIEFIKSRGNDYVD 261 L+PP+R++S A F ++EFI SR + D Sbjct: 455 LSPPYRIRSKRTAVFKSRQLEFI-SREEEKAD 485 >At2g41630.1 68415.m05144 transcription initiation factor IIB-1 / general transcription factor TFIIB-1 (TFIIB1) identical to transcription initiation factor IIB-1 (TFIIB1) SP:P48512 from [Arabidopsis thaliana] Length = 312 Score = 27.5 bits (58), Expect = 9.1 Identities = 10/29 (34%), Positives = 16/29 (55%) Frame = +1 Query: 73 YCLDCNQRGPTYVNTTIGSFVCSKCSGML 159 YC DC + V+ + G +CS+C +L Sbjct: 5 YCTDCKKETELVVDHSAGDTLCSECGLVL 33 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 12,716,368 Number of Sequences: 28952 Number of extensions: 242885 Number of successful extensions: 620 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 606 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 613 length of database: 12,070,560 effective HSP length: 79 effective length of database: 9,783,352 effective search space used: 1506636208 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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