Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0493
(701 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g13350.2 68417.m02088 human Rev interacting-like protein-rela... 93 2e-19
At4g13350.1 68417.m02087 human Rev interacting-like protein-rela... 93 2e-19
At1g08680.2 68414.m00965 ARF GAP-like zinc finger-containing pro... 82 3e-16
At1g08680.1 68414.m00964 ARF GAP-like zinc finger-containing pro... 82 3e-16
At5g54310.1 68418.m06764 ARF GAP-like zinc finger-containing pro... 65 5e-11
At3g17660.1 68416.m02255 human Rev interacting-like family prote... 63 2e-10
At4g17890.1 68417.m02666 human Rev interacting-like family prote... 56 2e-08
At3g07940.1 68416.m00971 zinc finger and C2 domain protein, puta... 56 3e-08
At5g46750.1 68418.m05759 human Rev interacting-like family prote... 54 7e-08
At3g53710.1 68416.m05933 ARF GAP-like zinc finger-containing pro... 54 9e-08
At2g37550.1 68415.m04605 arabidopsis pde1 suppressor 1 protein (... 54 1e-07
At2g35210.2 68415.m04318 human Rev interacting-like family prote... 52 3e-07
At2g35210.1 68415.m04319 human Rev interacting-like family prote... 52 3e-07
At4g05330.1 68417.m00815 zinc finger and C2 domain protein, puta... 50 1e-06
At4g21160.4 68417.m03061 zinc finger and C2 domain protein (ZAC)... 49 3e-06
At4g21160.3 68417.m03060 zinc finger and C2 domain protein (ZAC)... 49 3e-06
At4g21160.2 68417.m03059 zinc finger and C2 domain protein (ZAC)... 49 3e-06
At4g21160.1 68417.m03058 zinc finger and C2 domain protein (ZAC)... 49 3e-06
At1g60860.1 68414.m06851 ARF GTPase-activating domain-containing... 44 7e-05
At5g61980.1 68418.m07779 ARF GTPase-activating domain-containing... 44 1e-04
At1g10870.1 68414.m01249 ARF GTPase-activating domain-containing... 42 3e-04
At5g13300.1 68418.m01528 ARF GTPase-activating domain-containing... 42 4e-04
At4g32630.1 68417.m04645 hypothetical protein 33 0.18
At5g39230.1 68418.m04751 transcription initiation factor-related... 29 3.0
At3g09370.1 68416.m01111 myb family transcription factor (MYB3R3... 28 6.9
At2g41630.1 68415.m05144 transcription initiation factor IIB-1 /... 27 9.1
>At4g13350.2 68417.m02088 human Rev interacting-like protein-related
/ hRIP protein-related similar to SP|P52594
Nucleoporin-like protein RIP (HIV-1 Rev-binding protein)
(Rev interacting protein) (Rev/Rex activation
domain-binding protein) {Homo sapiens}; contains Pfam
profile PF01412: Putative GTPase activating protein for
Arf
Length = 602
Score = 92.7 bits (220), Expect = 2e-19
Identities = 44/85 (51%), Positives = 58/85 (68%)
Frame = +1
Query: 1 ANRRKQDDKNLEILRELISLNGNKYCLDCNQRGPTYVNTTIGSFVCSKCSGMLRGLTPPH 180
A R K+D+KN +I+R L+ L NK C++CN GP YV TT +FVC+ CSG+ R T H
Sbjct: 2 AGRVKEDEKNEKIIRSLLKLPENKRCINCNSLGPQYVCTTFWTFVCTNCSGIHREFT--H 59
Query: 181 RVKSISMATFTPEEIEFIKSRGNDY 255
RVKSISMA FT +E+ +K GN +
Sbjct: 60 RVKSISMAKFTSQEVTALKEGGNQH 84
>At4g13350.1 68417.m02087 human Rev interacting-like protein-related
/ hRIP protein-related similar to SP|P52594
Nucleoporin-like protein RIP (HIV-1 Rev-binding protein)
(Rev interacting protein) (Rev/Rex activation
domain-binding protein) {Homo sapiens}; contains Pfam
profile PF01412: Putative GTPase activating protein for
Arf
Length = 602
Score = 92.7 bits (220), Expect = 2e-19
Identities = 44/85 (51%), Positives = 58/85 (68%)
Frame = +1
Query: 1 ANRRKQDDKNLEILRELISLNGNKYCLDCNQRGPTYVNTTIGSFVCSKCSGMLRGLTPPH 180
A R K+D+KN +I+R L+ L NK C++CN GP YV TT +FVC+ CSG+ R T H
Sbjct: 2 AGRVKEDEKNEKIIRSLLKLPENKRCINCNSLGPQYVCTTFWTFVCTNCSGIHREFT--H 59
Query: 181 RVKSISMATFTPEEIEFIKSRGNDY 255
RVKSISMA FT +E+ +K GN +
Sbjct: 60 RVKSISMAKFTSQEVTALKEGGNQH 84
>At1g08680.2 68414.m00965 ARF GAP-like zinc finger-containing
protein ZiGA4 (ZIGA4) nearly identical to ARF GAP-like
zinc finger-containing protein ZiGA4 GI:10441354 from
[Arabidopsis thaliana]; contains InterPro accession
IPR001164: Human Rev interacting-like protein (hRIP)
Length = 648
Score = 82.2 bits (194), Expect = 3e-16
Identities = 36/80 (45%), Positives = 57/80 (71%)
Frame = +1
Query: 10 RKQDDKNLEILRELISLNGNKYCLDCNQRGPTYVNTTIGSFVCSKCSGMLRGLTPPHRVK 189
++++++N +I+R L+ L N+ C++CN GP YV TT +FVC CSG+ R T HRVK
Sbjct: 5 KREEERNEKIIRGLMKLPPNRRCINCNSLGPQYVCTTFWTFVCMACSGIHREFT--HRVK 62
Query: 190 SISMATFTPEEIEFIKSRGN 249
S+SM+ FT +E+E +++ GN
Sbjct: 63 SVSMSKFTSKEVEVLQNGGN 82
>At1g08680.1 68414.m00964 ARF GAP-like zinc finger-containing
protein ZiGA4 (ZIGA4) nearly identical to ARF GAP-like
zinc finger-containing protein ZiGA4 GI:10441354 from
[Arabidopsis thaliana]; contains InterPro accession
IPR001164: Human Rev interacting-like protein (hRIP)
Length = 649
Score = 82.2 bits (194), Expect = 3e-16
Identities = 36/80 (45%), Positives = 57/80 (71%)
Frame = +1
Query: 10 RKQDDKNLEILRELISLNGNKYCLDCNQRGPTYVNTTIGSFVCSKCSGMLRGLTPPHRVK 189
++++++N +I+R L+ L N+ C++CN GP YV TT +FVC CSG+ R T HRVK
Sbjct: 5 KREEERNEKIIRGLMKLPPNRRCINCNSLGPQYVCTTFWTFVCMACSGIHREFT--HRVK 62
Query: 190 SISMATFTPEEIEFIKSRGN 249
S+SM+ FT +E+E +++ GN
Sbjct: 63 SVSMSKFTSKEVEVLQNGGN 82
>At5g54310.1 68418.m06764 ARF GAP-like zinc finger-containing
protein ZIGA3 (ZIGA3) nearly identical to ARF GAP-like
zinc finger-containing protein ZIGA3 GI:10441352 from
[Arabidopsis thaliana]; contains InterPro accession
IPR001164: Human Rev interacting-like protein (hRIP)
Length = 483
Score = 64.9 bits (151), Expect = 5e-11
Identities = 31/86 (36%), Positives = 53/86 (61%), Gaps = 2/86 (2%)
Frame = +1
Query: 1 ANRRKQ-DDKNLEILRELISLNGNKYCLDCNQRGPTYVNTTIGSFVCSKCSGMLRGL-TP 174
AN K+ + ++ +IL L+ N+ C DC +GP + + +G F+C +CSG+ R L
Sbjct: 5 ANVSKELNARHRKILEGLLKHPENRECADCKTKGPRWASVNLGIFICMQCSGIHRSLGVH 64
Query: 175 PHRVKSISMATFTPEEIEFIKSRGND 252
+V+S ++ T+ PE++ FI+S GND
Sbjct: 65 ISKVRSATLDTWLPEQVAFIQSMGND 90
>At3g17660.1 68416.m02255 human Rev interacting-like family protein
/ hRIP family protein similar to ARF GAP-like zinc
finger-containing protein ZIGA3 GI:10441352 from
[Arabidopsis thaliana]; contains InterPro accession
IPR001164: Human Rev interacting-like protein (hRIP)
Length = 117
Score = 62.9 bits (146), Expect = 2e-10
Identities = 27/76 (35%), Positives = 47/76 (61%), Gaps = 1/76 (1%)
Frame = +1
Query: 25 KNLEILRELISLNGNKYCLDCNQRGPTYVNTTIGSFVCSKCSGMLRGL-TPPHRVKSISM 201
K+ +IL L+ N+ C DC + P + + +G F+C +CSG+ R L +V+SI++
Sbjct: 14 KHSKILEALLKHPDNRECADCRSKAPRWASVNLGIFICMQCSGIHRSLGVHISQVRSITL 73
Query: 202 ATFTPEEIEFIKSRGN 249
T+ P+++ F+KS GN
Sbjct: 74 DTWLPDQVAFMKSTGN 89
>At4g17890.1 68417.m02666 human Rev interacting-like family protein
/ hRIP family protein contains InterPro accession
IPR001164: Human Rev interacting-like protein (hRIP)
Length = 413
Score = 56.4 bits (130), Expect = 2e-08
Identities = 28/83 (33%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Frame = +1
Query: 22 DKNLEILRELISLNGNKYCLDCNQRGPTYVNTTIGSFVCSKCSGMLRGL-TPPHRVKSIS 198
DKN+ + R+L S + NK C DC+ + PT+ + T G F+C CS R L V+S +
Sbjct: 11 DKNI-VFRKLKSKSENKVCFDCSAKNPTWASVTYGIFLCIDCSATHRNLGVHISFVRSTN 69
Query: 199 MATFTPEEIEFIKSRGNDYVDLF 267
+ +++PE++ + GN+ +F
Sbjct: 70 LDSWSPEQLRTMMFGGNNRAQVF 92
>At3g07940.1 68416.m00971 zinc finger and C2 domain protein,
putative similar to zinc finger and C2 domain protein
GI:9957238 from [Arabidopsis thaliana];contains Pfam
profile: PF01412 Putative GTP-ase activating protein for
Arf
Length = 385
Score = 55.6 bits (128), Expect = 3e-08
Identities = 24/72 (33%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Frame = +1
Query: 40 LRELISLNGNKYCLDCNQRGPTYVNTTIGSFVCSKCSGMLRGL-TPPHRVKSISMATFTP 216
L +L+ GNKYC DC P +V+ ++G F+C KCSG+ R L +V S+ + +T
Sbjct: 50 LEKLLKQPGNKYCADCGSPEPKWVSLSLGVFICIKCSGVHRSLGVHISKVLSVKLDEWTD 109
Query: 217 EEIEFIKSRGND 252
++++ + G +
Sbjct: 110 DQVDMLVGYGGN 121
>At5g46750.1 68418.m05759 human Rev interacting-like family protein
/ hRIP family protein contains Pfam profile PF01412:
Putative GTP-ase activating protein for Arf
Length = 402
Score = 54.4 bits (125), Expect = 7e-08
Identities = 27/83 (32%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Frame = +1
Query: 22 DKNLEILRELISLNGNKYCLDCNQRGPTYVNTTIGSFVCSKCSGMLRGL-TPPHRVKSIS 198
DKN+ + R+L S + NK C DC+ + PT+ + G F+C CS + R L V+S +
Sbjct: 8 DKNV-VFRKLKSKSENKVCFDCSAKNPTWASVPYGIFLCIDCSAVHRSLGVHISFVRSTN 66
Query: 199 MATFTPEEIEFIKSRGNDYVDLF 267
+ +++PE++ + GN+ +F
Sbjct: 67 LDSWSPEQLRTMMFGGNNRAQVF 89
>At3g53710.1 68416.m05933 ARF GAP-like zinc finger-containing
protein ZIGA2 (ZIGA2) nearly identical to ARF GAP-like
zinc finger-containing protein ZIGA2 from GI:10441356
[Arabidopsis thaliana]; contains InterPro accession
IPR001164: Human Rev interacting-like protein (hRIP)
Length = 459
Score = 54.0 bits (124), Expect = 9e-08
Identities = 27/77 (35%), Positives = 48/77 (62%), Gaps = 1/77 (1%)
Frame = +1
Query: 40 LRELISLNGNKYCLDCNQRGPTYVNTTIGSFVCSKCSGMLRGL-TPPHRVKSISMATFTP 216
LR L S NK C+DC Q+ P + + + G F+C +CSG RGL V+S++M +++
Sbjct: 7 LRTLQSQPENKVCVDCAQKNPQWASVSYGIFMCLECSGKHRGLGVHISFVRSVTMDSWSA 66
Query: 217 EEIEFIKSRGNDYVDLF 267
+I+ +++ GN+ ++ F
Sbjct: 67 IQIKKMEAGGNERLNKF 83
>At2g37550.1 68415.m04605 arabidopsis pde1 suppressor 1 protein
(ASP1) identical to arabidopsis pde1 suppressor 1 (Asp1)
from GI:4519792 [Arabidopsis thaliana]; contains
InterPro accession IPR001164: Human Rev interacting-like
protein (hRIP)
Length = 456
Score = 53.6 bits (123), Expect = 1e-07
Identities = 27/77 (35%), Positives = 48/77 (62%), Gaps = 1/77 (1%)
Frame = +1
Query: 40 LRELISLNGNKYCLDCNQRGPTYVNTTIGSFVCSKCSGMLRGL-TPPHRVKSISMATFTP 216
LR L S NK C+DC+Q+ P + + + G F+C +CSG RGL V+S++M +++
Sbjct: 7 LRTLQSQPENKVCVDCSQKNPQWASISYGIFMCLECSGKHRGLGVHISFVRSVTMDSWSE 66
Query: 217 EEIEFIKSRGNDYVDLF 267
+I+ + + GN+ ++ F
Sbjct: 67 IQIKKMDAGGNERLNNF 83
>At2g35210.2 68415.m04318 human Rev interacting-like family protein
/ hRIP family protein similar to ARFGAP1 protein
GI:7211442 from [Homo sapiens]; contains InterPro
accession IPR001164: Human Rev interacting-like protein
(hRIP)
Length = 371
Score = 52.4 bits (120), Expect = 3e-07
Identities = 25/84 (29%), Positives = 49/84 (58%), Gaps = 1/84 (1%)
Frame = +1
Query: 19 DDKNLEILRELISLNGNKYCLDCNQRGPTYVNTTIGSFVCSKCSGMLRGL-TPPHRVKSI 195
+DK + + ++L + + NK C DCN + PT+ + T G F+C CS + R L V+S
Sbjct: 7 NDK-ISVFKKLKAKSDNKICFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRST 65
Query: 196 SMATFTPEEIEFIKSRGNDYVDLF 267
++ +++ E+++ + GN+ +F
Sbjct: 66 NLDSWSSEQLKMMIYGGNNRAQVF 89
>At2g35210.1 68415.m04319 human Rev interacting-like family protein
/ hRIP family protein similar to ARFGAP1 protein
GI:7211442 from [Homo sapiens]; contains InterPro
accession IPR001164: Human Rev interacting-like protein
(hRIP)
Length = 395
Score = 52.4 bits (120), Expect = 3e-07
Identities = 25/84 (29%), Positives = 49/84 (58%), Gaps = 1/84 (1%)
Frame = +1
Query: 19 DDKNLEILRELISLNGNKYCLDCNQRGPTYVNTTIGSFVCSKCSGMLRGL-TPPHRVKSI 195
+DK + + ++L + + NK C DCN + PT+ + T G F+C CS + R L V+S
Sbjct: 7 NDK-ISVFKKLKAKSDNKICFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRST 65
Query: 196 SMATFTPEEIEFIKSRGNDYVDLF 267
++ +++ E+++ + GN+ +F
Sbjct: 66 NLDSWSSEQLKMMIYGGNNRAQVF 89
>At4g05330.1 68417.m00815 zinc finger and C2 domain protein,
putative similar to zinc finger and C2 domain protein
GI:9957238 from [Arabidopsis thaliana]
Length = 336
Score = 50.0 bits (114), Expect = 1e-06
Identities = 24/72 (33%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Frame = +1
Query: 40 LRELISLNGNKYCLDCNQRGPTYVNTTIGSFVCSKCSGMLRGL-TPPHRVKSISMATFTP 216
+R+L++ N+ C DC P + + IG F+C KC G+ R L T +V S+++ ++
Sbjct: 18 IRDLLNQPDNRVCADCGASDPKWASANIGVFICLKCCGVHRSLGTHISKVLSVTLDEWSD 77
Query: 217 EEIE-FIKSRGN 249
EE++ I+ GN
Sbjct: 78 EEVDSMIEIGGN 89
>At4g21160.4 68417.m03061 zinc finger and C2 domain protein (ZAC)
identical to zinc finger and C2 domain protein
GI:9957238 from [Arabidopsis thaliana]
Length = 337
Score = 49.2 bits (112), Expect = 3e-06
Identities = 23/72 (31%), Positives = 43/72 (59%), Gaps = 2/72 (2%)
Frame = +1
Query: 40 LRELISLNGNKYCLDCNQRGPTYVNTTIGSFVCSKCSGMLRGL-TPPHRVKSISMATFTP 216
+R+L++ + N+ C DC P + + IG F+C KC G+ R L + +V S+++ ++
Sbjct: 18 IRDLLTQSDNRVCADCGAPDPKWASANIGVFICLKCCGVHRSLGSHISKVLSVTLDEWSD 77
Query: 217 EEIE-FIKSRGN 249
EE++ I+ GN
Sbjct: 78 EEVDSMIEIGGN 89
>At4g21160.3 68417.m03060 zinc finger and C2 domain protein (ZAC)
identical to zinc finger and C2 domain protein
GI:9957238 from [Arabidopsis thaliana]
Length = 337
Score = 49.2 bits (112), Expect = 3e-06
Identities = 23/72 (31%), Positives = 43/72 (59%), Gaps = 2/72 (2%)
Frame = +1
Query: 40 LRELISLNGNKYCLDCNQRGPTYVNTTIGSFVCSKCSGMLRGL-TPPHRVKSISMATFTP 216
+R+L++ + N+ C DC P + + IG F+C KC G+ R L + +V S+++ ++
Sbjct: 18 IRDLLTQSDNRVCADCGAPDPKWASANIGVFICLKCCGVHRSLGSHISKVLSVTLDEWSD 77
Query: 217 EEIE-FIKSRGN 249
EE++ I+ GN
Sbjct: 78 EEVDSMIEIGGN 89
>At4g21160.2 68417.m03059 zinc finger and C2 domain protein (ZAC)
identical to zinc finger and C2 domain protein
GI:9957238 from [Arabidopsis thaliana]
Length = 337
Score = 49.2 bits (112), Expect = 3e-06
Identities = 23/72 (31%), Positives = 43/72 (59%), Gaps = 2/72 (2%)
Frame = +1
Query: 40 LRELISLNGNKYCLDCNQRGPTYVNTTIGSFVCSKCSGMLRGL-TPPHRVKSISMATFTP 216
+R+L++ + N+ C DC P + + IG F+C KC G+ R L + +V S+++ ++
Sbjct: 18 IRDLLTQSDNRVCADCGAPDPKWASANIGVFICLKCCGVHRSLGSHISKVLSVTLDEWSD 77
Query: 217 EEIE-FIKSRGN 249
EE++ I+ GN
Sbjct: 78 EEVDSMIEIGGN 89
>At4g21160.1 68417.m03058 zinc finger and C2 domain protein (ZAC)
identical to zinc finger and C2 domain protein
GI:9957238 from [Arabidopsis thaliana]
Length = 337
Score = 49.2 bits (112), Expect = 3e-06
Identities = 23/72 (31%), Positives = 43/72 (59%), Gaps = 2/72 (2%)
Frame = +1
Query: 40 LRELISLNGNKYCLDCNQRGPTYVNTTIGSFVCSKCSGMLRGL-TPPHRVKSISMATFTP 216
+R+L++ + N+ C DC P + + IG F+C KC G+ R L + +V S+++ ++
Sbjct: 18 IRDLLTQSDNRVCADCGAPDPKWASANIGVFICLKCCGVHRSLGSHISKVLSVTLDEWSD 77
Query: 217 EEIE-FIKSRGN 249
EE++ I+ GN
Sbjct: 78 EEVDSMIEIGGN 89
>At1g60860.1 68414.m06851 ARF GTPase-activating domain-containing
protein
Length = 776
Score = 44.4 bits (100), Expect = 7e-05
Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 3/81 (3%)
Frame = +1
Query: 22 DKNLEILRELISLNGNKYCLDCNQRGPTYVNTTIGSFVCSKCSGMLRGL-TPPHRVKSIS 198
D L ILRE+ GN C +CN P + + +G +C +CSG+ R L +V+S++
Sbjct: 467 DDVLTILREI---PGNNTCAECNAPDPDWASLNLGVLMCIECSGVHRNLGVHISKVRSLT 523
Query: 199 M--ATFTPEEIEFIKSRGNDY 255
+ + P ++ ++ GN Y
Sbjct: 524 LDVKVWEPTILDLFRNLGNGY 544
>At5g61980.1 68418.m07779 ARF GTPase-activating domain-containing
protein similar to GCN4-complementing protein (GCP1)
GI:6465806 from [Arabidopsis thaliana]
Length = 850
Score = 44.0 bits (99), Expect = 1e-04
Identities = 23/83 (27%), Positives = 45/83 (54%), Gaps = 3/83 (3%)
Frame = +1
Query: 22 DKNLEILRELISLNGNKYCLDCNQRGPTYVNTTIGSFVCSKCSGMLRGL-TPPHRVKSIS 198
+K +++L ++ GN+ C DC P + + +G +C +CSG+ R L +V+S++
Sbjct: 520 EKPIDVLTRVL---GNERCADCGAPEPDWASLNLGVLICIECSGIHRNLGVHISKVRSLT 576
Query: 199 M--ATFTPEEIEFIKSRGNDYVD 261
+ + P + +S GN YV+
Sbjct: 577 LDVKVWEPSVLTLFQSLGNVYVN 599
>At1g10870.1 68414.m01249 ARF GTPase-activating domain-containing
protein
Length = 775
Score = 42.3 bits (95), Expect = 3e-04
Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 3/72 (4%)
Frame = +1
Query: 49 LISLNGNKYCLDCNQRGPTYVNTTIGSFVCSKCSGMLRGL-TPPHRVKSISM--ATFTPE 219
L L GN C +CN P + + +G +C +CSG+ R L +V+S+S+ + P
Sbjct: 473 LRGLPGNNACAECNAPEPDWASLNLGVLLCIQCSGVHRNLGVHISKVRSLSLDVKVWEPT 532
Query: 220 EIEFIKSRGNDY 255
++ ++ GN Y
Sbjct: 533 ILDLFRNLGNVY 544
>At5g13300.1 68418.m01528 ARF GTPase-activating domain-containing
protein similar to GCN4-complementing protein (GCP1)
GI:6465806 from [Arabidopsis thaliana]
Length = 768
Score = 41.9 bits (94), Expect = 4e-04
Identities = 23/86 (26%), Positives = 45/86 (52%), Gaps = 3/86 (3%)
Frame = +1
Query: 13 KQDDKNLEILRELISLNGNKYCLDCNQRGPTYVNTTIGSFVCSKCSGMLRGL-TPPHRVK 189
++ +K ++ LR++ GN C DC P + + +G VC +CSG+ R L +V+
Sbjct: 439 RKGEKPIDALRKVC---GNDKCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVR 495
Query: 190 SISM--ATFTPEEIEFIKSRGNDYVD 261
S+++ + P I ++ GN + +
Sbjct: 496 SLTLDVKVWEPSVISLFQALGNTFAN 521
>At4g32630.1 68417.m04645 hypothetical protein
Length = 531
Score = 33.1 bits (72), Expect = 0.18
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Frame = +1
Query: 13 KQDDKNLEILRELISLNGNKYCLDCNQR-GPTYVNTTIGSFVCSKCSGMLRGLT 171
K+D++ + +R L+ L N+ C++CN G T++ + ++ SG+L LT
Sbjct: 2 KEDERTEKAIRSLLKLPENRRCINCNSLVGTTFLADHTVHNMYAQLSGLLSALT 55
>At5g39230.1 68418.m04751 transcription initiation factor-related
contains weak similarity to Transcription initiation
factor IIB (General transcription factor TFIIB)
(Swiss-Prot:Q8W0W3) [Oryza sativa]
Length = 119
Score = 29.1 bits (62), Expect = 3.0
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +1
Query: 76 CLDCNQRGPTYVNTTIGSFVCSKCSGML 159
CLDC +R T ++ G +C++C +L
Sbjct: 6 CLDCKKRTDTVIDYRSGDTICTECGLIL 33
>At3g09370.1 68416.m01111 myb family transcription factor (MYB3R3)
contains Pfam profile: Myb DNA-binding proteins;
identical to cDNA putative c-myb-like transcription
factor (MYB3R3) GI:15375285
Length = 505
Score = 27.9 bits (59), Expect = 6.9
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +1
Query: 166 LTPPHRVKSISMATFTPEEIEFIKSRGNDYVD 261
L+PP+R++S A F ++EFI SR + D
Sbjct: 455 LSPPYRIRSKRTAVFKSRQLEFI-SREEEKAD 485
>At2g41630.1 68415.m05144 transcription initiation factor IIB-1 /
general transcription factor TFIIB-1 (TFIIB1) identical
to transcription initiation factor IIB-1 (TFIIB1)
SP:P48512 from [Arabidopsis thaliana]
Length = 312
Score = 27.5 bits (58), Expect = 9.1
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +1
Query: 73 YCLDCNQRGPTYVNTTIGSFVCSKCSGML 159
YC DC + V+ + G +CS+C +L
Sbjct: 5 YCTDCKKETELVVDHSAGDTLCSECGLVL 33
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,716,368
Number of Sequences: 28952
Number of extensions: 242885
Number of successful extensions: 620
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 606
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 613
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1506636208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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