Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0492
(785 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC15E1.09 |grx2||glutaredoxin Grx2|Schizosaccharomyces pombe|c... 49 7e-07
SPAC4F10.20 |grx1||glutaredoxin Grx1|Schizosaccharomyces pombe|c... 48 1e-06
SPCC1450.06c |grx3||monothiol glutaredoxin Grx3|Schizosaccharomy... 42 1e-04
SPAPB2B4.02 |grx5||monothiol glutaredoxin Grx5|Schizosaccharomyc... 38 0.002
SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|c... 34 0.027
SPAC3H8.04 |||chromosome segregation protein|Schizosaccharomyces... 27 4.0
SPCC63.07 |||tRNA guanylyltransferase |Schizosaccharomyces pombe... 26 7.0
SPBC2G2.12 |||histidine-tRNA ligase|Schizosaccharomyces pombe|ch... 26 7.0
SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces ... 25 9.3
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 25 9.3
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 25 9.3
SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces... 25 9.3
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy... 25 9.3
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 25 9.3
>SPAC15E1.09 |grx2||glutaredoxin Grx2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 110
Score = 49.2 bits (112), Expect = 7e-07
Identities = 20/40 (50%), Positives = 27/40 (67%)
Frame = +2
Query: 134 FIKEAISKDKVVVFSKSYCPYCKLAKDVFEKVKQPIKVIE 253
F+++AIS + V VFSKS+CP+CK AK+ K P K E
Sbjct: 8 FVEKAISNNPVTVFSKSFCPFCKAAKNTLTKYSAPYKAYE 47
Score = 39.1 bits (87), Expect = 7e-04
Identities = 19/55 (34%), Positives = 31/55 (56%)
Frame = +1
Query: 244 SY*VNERDDGNTIQDNLAQLTGFRTVPQVFINGNCVGGGSDVKALYESGKLEPML 408
+Y +++ ++G+ IQ L + T TVP +F +GG SD+ L SG L M+
Sbjct: 45 AYELDKIENGSDIQAYLHEKTKQSTVPSIFFRNQFIGGNSDLNKLRSSGTLTKMI 99
>SPAC4F10.20 |grx1||glutaredoxin Grx1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 101
Score = 48.4 bits (110), Expect = 1e-06
Identities = 22/53 (41%), Positives = 36/53 (67%)
Frame = +1
Query: 247 Y*VNERDDGNTIQDNLAQLTGFRTVPQVFINGNCVGGGSDVKALYESGKLEPM 405
Y ++ ++G+ IQ L + TG RTVP +FI+ VGG SD +AL++ G+L+ +
Sbjct: 45 YQIDLMNNGDEIQSYLLKKTGQRTVPNIFIHQKHVGGNSDFQALFKKGELDSL 97
Score = 44.4 bits (100), Expect = 2e-05
Identities = 19/48 (39%), Positives = 31/48 (64%), Gaps = 2/48 (4%)
Frame = +2
Query: 125 IQQFIKEAISKDKVVVFSKSYCPYCKLAKDVF--EKVKQPIKVIE*MN 262
++ F+ A++ + VVVF+KSYCPYC + V +K+K + I+ MN
Sbjct: 4 VESFVDSAVADNDVVVFAKSYCPYCHATEKVIADKKIKAQVYQIDLMN 51
>SPCC1450.06c |grx3||monothiol glutaredoxin Grx3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 166
Score = 41.5 bits (93), Expect = 1e-04
Identities = 16/52 (30%), Positives = 31/52 (59%)
Frame = +1
Query: 253 VNERDDGNTIQDNLAQLTGFRTVPQVFINGNCVGGGSDVKALYESGKLEPML 408
V + + ++D L+ ++ T+P +F+ G+ +GG V+ALY+ KL+ L
Sbjct: 101 VTDYEHTQELRDWLSSISDISTMPNIFVGGHSIGGSDSVRALYQEEKLQSTL 152
>SPAPB2B4.02 |grx5||monothiol glutaredoxin Grx5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 146
Score = 37.5 bits (83), Expect = 0.002
Identities = 13/43 (30%), Positives = 30/43 (69%)
Frame = +1
Query: 280 IQDNLAQLTGFRTVPQVFINGNCVGGGSDVKALYESGKLEPML 408
+++ + + + + T+PQ++ING VGG + ++++SG+L +L
Sbjct: 82 LREGIKEFSDWPTIPQLYINGEFVGGSDILASMHKSGELHKIL 124
>SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 33.9 bits (74), Expect = 0.027
Identities = 15/45 (33%), Positives = 27/45 (60%)
Frame = +1
Query: 274 NTIQDNLAQLTGFRTVPQVFINGNCVGGGSDVKALYESGKLEPML 408
++++ L + + T PQ++I G VGG V + E+G+L+ ML
Sbjct: 198 DSVRQGLKVFSDWPTFPQLYIKGEFVGGLDIVSEMIENGELQEML 242
>SPAC3H8.04 |||chromosome segregation protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 338
Score = 26.6 bits (56), Expect = 4.0
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = -2
Query: 502 NLKRK*HFICTPKYKFKYANNNKTI 428
N K HF+C KF+ NN K++
Sbjct: 57 NSKANNHFLCNSPLKFEIFNNEKSV 81
>SPCC63.07 |||tRNA guanylyltransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 261
Score = 25.8 bits (54), Expect = 7.0
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = -2
Query: 322 VQF*NQSVVRDYLEW-CFHHHVHSLNNFNWLLHFLKNIF 209
V + N V+RDYL W H+++L N + + LK F
Sbjct: 131 VLYPNMKVLRDYLHWRQVDCHINNLYNTTFWMLILKGGF 169
>SPBC2G2.12 |||histidine-tRNA ligase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 538
Score = 25.8 bits (54), Expect = 7.0
Identities = 14/47 (29%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = +2
Query: 479 KMLFTFQVNSGCLCSYIYVLTNPFKKNVLLN-SLLSRRQI*LSVVFR 616
K+++ + G LCS Y LT PF + + +N + S ++ ++ V+R
Sbjct: 119 KLIYDLKDQGGELCSLRYDLTVPFARWLAMNPKVTSIKRFHIAKVYR 165
>SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 359
Score = 25.4 bits (53), Expect = 9.3
Identities = 19/71 (26%), Positives = 29/71 (40%), Gaps = 2/71 (2%)
Frame = +2
Query: 38 DSYFHLEIQYMGSQSGKITRSSKMAGSIDIQQFIKEAIS--KDKVVVFSKSYCPYCKLAK 211
DS + G + KI S + +D F K + KD +V F +C YCK
Sbjct: 119 DSLTQFVSEKTGIKKRKIVLPSNVV-ELDSLNFDKVVMDDKKDVLVEFYADWCGYCKRLA 177
Query: 212 DVFEKVKQPIK 244
+E + + K
Sbjct: 178 PTYETLGKVFK 188
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 9.3
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +2
Query: 158 DKVVVFSKSYCPYCKLAKDVFEKVKQPIKVI 250
D +++ SKS + K KDV +K+K +I
Sbjct: 566 DNILIHSKSESEHVKHVKDVLQKLKNANLII 596
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 9.3
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +2
Query: 158 DKVVVFSKSYCPYCKLAKDVFEKVKQPIKVI 250
D +++ SKS + K KDV +K+K +I
Sbjct: 566 DNILIHSKSESEHVKHVKDVLQKLKNANLII 596
>SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1155
Score = 25.4 bits (53), Expect = 9.3
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = -2
Query: 304 SVVRDYLEWCFHHHVHSLNNFNWLLHFLK 218
S+V + + W F HV +L++++ L LK
Sbjct: 1125 SIVVEIIHWFFSEHVETLHDYSNFLKELK 1153
>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1583
Score = 25.4 bits (53), Expect = 9.3
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = -2
Query: 268 HHVHSLNNFNWLLHFLKNIFCQLTVRTVRFGEHYNFVFGDSFLDKLL 128
H++ + NFN ++ F+ +I + V F Y GD L+ +L
Sbjct: 656 HNIPAPTNFNDIISFIPSITRLNELSQVSFNHFYFLCKGDISLENIL 702
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 9.3
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +2
Query: 158 DKVVVFSKSYCPYCKLAKDVFEKVKQPIKVI 250
D +++ SKS + K KDV +K+K +I
Sbjct: 566 DNILIHSKSESEHVKHVKDVLQKLKNANLII 596
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,243,134
Number of Sequences: 5004
Number of extensions: 67394
Number of successful extensions: 193
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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