Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0492
         (785 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4742| Best HMM Match : Glutaredoxin (HMM E-Value=5.6e-19)           62   5e-10
SB_27553| Best HMM Match : Pyr_redox (HMM E-Value=1.1e-20)             48   1e-05
SB_52133| Best HMM Match : Glutaredoxin (HMM E-Value=4.4e-17)          40   0.003
SB_20536| Best HMM Match : No HMM Matches (HMM E-Value=.)              37   0.016
SB_31341| Best HMM Match : UDP-g_GGTase (HMM E-Value=0)                31   0.80 
SB_45748| Best HMM Match : Glutaredoxin (HMM E-Value=0.00065)          30   1.8  
SB_45745| Best HMM Match : Glutaredoxin (HMM E-Value=0.00065)          30   1.8  
SB_1233| Best HMM Match : DUF547 (HMM E-Value=0)                       30   1.8  
SB_47115| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  
SB_30152| Best HMM Match : Ank (HMM E-Value=1.8e-23)                   28   7.5  

>SB_4742| Best HMM Match : Glutaredoxin (HMM E-Value=5.6e-19)
          Length = 111

 Score = 62.1 bits (144), Expect = 5e-10
 Identities = 27/54 (50%), Positives = 38/54 (70%)
 Frame = +1

Query: 247 Y*VNERDDGNTIQDNLAQLTGFRTVPQVFINGNCVGGGSDVKALYESGKLEPML 408
           Y + +R+DG+ IQD L +LTG  TVP VF+ G  +GGG +   LY+SGKL+ +L
Sbjct: 48  YELEQREDGHFIQDALKELTGRGTVPNVFVKGQSIGGGMETAELYQSGKLKQLL 101


>SB_27553| Best HMM Match : Pyr_redox (HMM E-Value=1.1e-20)
          Length = 1037

 Score = 47.6 bits (108), Expect = 1e-05
 Identities = 20/58 (34%), Positives = 35/58 (60%)
 Frame = +2

Query: 80  SGKITRSSKMAGSIDIQQFIKEAISKDKVVVFSKSYCPYCKLAKDVFEKVKQPIKVIE 253
           S +   +  MA    IQ+ I+++I+ + V++FSKS+CP+CK  K +FE +      +E
Sbjct: 551 SDRSPEAKVMAPVPQIQRLIEDSINNNAVMIFSKSFCPFCKKVKAIFESINVQYTAME 608



 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 20/49 (40%), Positives = 30/49 (61%)
 Frame = +1

Query: 265 DDGNTIQDNLAQLTGFRTVPQVFINGNCVGGGSDVKALYESGKLEPMLI 411
           D+G  IQ+ L + +G +TVP V+I GN VGG   +  L E  K+  ++I
Sbjct: 613 DNGPAIQEALLEKSGQKTVPNVYIRGNHVGGSDIITKLQEENKILGLII 661


>SB_52133| Best HMM Match : Glutaredoxin (HMM E-Value=4.4e-17)
          Length = 374

 Score = 39.5 bits (88), Expect = 0.003
 Identities = 16/32 (50%), Positives = 24/32 (75%)
 Frame = +1

Query: 319 VPQVFINGNCVGGGSDVKALYESGKLEPMLIG 414
           VPQVF+NG C+GG  ++  L E+G+L+ +L G
Sbjct: 279 VPQVFVNGICLGGSKELLHLNETGELKELLSG 310


>SB_20536| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 36

 Score = 37.1 bits (82), Expect = 0.016
 Identities = 17/30 (56%), Positives = 21/30 (70%)
 Frame = +1

Query: 319 VPQVFINGNCVGGGSDVKALYESGKLEPML 408
           VPQV ING  +GGG++ + L  SGKL  ML
Sbjct: 1   VPQVHINGKFIGGGTETEDLERSGKLLEML 30


>SB_31341| Best HMM Match : UDP-g_GGTase (HMM E-Value=0)
          Length = 1031

 Score = 31.5 bits (68), Expect = 0.80
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +1

Query: 256 NERDDGNTIQDNLAQLTGFRTVPQVFING 342
           +E DDG          TGF+T PQV +NG
Sbjct: 490 SENDDGRKAWKRFHDRTGFQTTPQVVVNG 518


>SB_45748| Best HMM Match : Glutaredoxin (HMM E-Value=0.00065)
          Length = 152

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 12/43 (27%), Positives = 24/43 (55%)
 Frame = +1

Query: 268 DGNTIQDNLAQLTGFRTVPQVFINGNCVGGGSDVKALYESGKL 396
           D   ++  + + + + T+PQV+I G  VGG   +  +++ G L
Sbjct: 88  DDEELRSRIKEFSEWPTIPQVYIGGEFVGGCDIMIKMHQEGDL 130


>SB_45745| Best HMM Match : Glutaredoxin (HMM E-Value=0.00065)
          Length = 152

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 12/43 (27%), Positives = 24/43 (55%)
 Frame = +1

Query: 268 DGNTIQDNLAQLTGFRTVPQVFINGNCVGGGSDVKALYESGKL 396
           D   ++  + + + + T+PQV+I G  VGG   +  +++ G L
Sbjct: 88  DDEELRSRIKEFSEWPTIPQVYIGGEFVGGCDIMIKMHQEGDL 130


>SB_1233| Best HMM Match : DUF547 (HMM E-Value=0)
          Length = 382

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 15/35 (42%), Positives = 22/35 (62%)
 Frame = +1

Query: 304 TGFRTVPQVFINGNCVGGGSDVKALYESGKLEPML 408
           +G RTVPQ+F N   VGG  D+  L  + K+E ++
Sbjct: 50  SGKRTVPQIFFNNIHVGGFDDLDKL-SADKMEELI 83


>SB_47115| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 830

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +3

Query: 405 VNRINFKLIVLLLFAYLNLYFGVHIKCYLRFKLIQAVCVH 524
           +   NF +I  LL    N YFG  ++ Y    ++ ++ VH
Sbjct: 419 IRSFNFMIIFSLLMNIANAYFGCVVEEYQNDSMVSSLVVH 458


>SB_30152| Best HMM Match : Ank (HMM E-Value=1.8e-23)
          Length = 393

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -3

Query: 357 TSHTVAIYKDLRYSSETSQLCEIILNGVS 271
           T HT +IY  L+Y   + + CE IL+ ++
Sbjct: 326 TPHTKSIYMALKYKVHSFKACETILDAIT 354


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,796,814
Number of Sequences: 59808
Number of extensions: 440967
Number of successful extensions: 1065
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 991
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1065
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2155861620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)