Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0490
         (762 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g10810.1 68418.m01256 enhancer of rudimentary protein, putati...    59   4e-09
At5g17600.1 68418.m02064 zinc finger (C3HC4-type RING finger) fa...    31   0.63 
At3g26040.1 68416.m03243 transferase family protein similar to d...    29   3.4  
At5g21970.1 68418.m02553 expressed protein supported by full-len...    28   5.9  
At3g25660.1 68416.m03194 glutamyl-tRNA(Gln) amidotransferase, pu...    28   5.9  

>At5g10810.1 68418.m01256 enhancer of rudimentary protein, putative
           identical to enhancer of rudimentary homolog SP:Q96319
           from [Arabidopsis thaliana]; contains Pfam profile:
           PF01133 enhancer of rudimentary
          Length = 109

 Score = 58.8 bits (136), Expect = 4e-09
 Identities = 25/59 (42%), Positives = 39/59 (66%)
 Frame = +3

Query: 222 EKAKP*YTHYHYDISQLFDFVDQLADLSCLVYQKSTNTYAPYNKDWIKEKIYVLLRQAA 398
           ++  P   +  YDI+ L++F+D LADLS LVY  S + Y PY++ WIK+K +  L++ A
Sbjct: 47  KEINPSLRNISYDIADLYNFIDGLADLSALVYDHSISAYLPYDRQWIKQKAFHHLKRIA 105



 Score = 55.2 bits (127), Expect = 4e-08
 Identities = 22/49 (44%), Positives = 32/49 (65%)
 Frame = +1

Query: 109 HTILLVQPGPRPETRTYSDYESVNDCMEGVCKIYEEHLKRRNPNTPTIT 255
           HTI+L+Q  P   TRT+ DY+S+   M+G+C +YE  LK  NP+   I+
Sbjct: 9   HTIILLQNSPSRATRTFMDYDSIGQAMDGICGLYERKLKEINPSLRNIS 57


>At5g17600.1 68418.m02064 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 362

 Score = 31.5 bits (68), Expect = 0.63
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +1

Query: 157 YSDYESVNDCMEGVCKIY 210
           +S Y+S NDC +G+C IY
Sbjct: 8   WSPYDSYNDCSQGICNIY 25


>At3g26040.1 68416.m03243 transferase family protein similar to
           deacetylvindoline 4-O-acetyltransferase [Catharanthus
           roseus][GI:4091808][PMID:9681034], alcohol
           acyltransferase [Fragaria x
           ananassa][GI:10121328][PMID:10810141]
          Length = 442

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 12/40 (30%), Positives = 24/40 (60%)
 Frame = -1

Query: 477 QLCIFSSLHCTVFLMLSFFYNLNHSVRPLDAIKHISFPLS 358
           +L +   L  T+F  + FFY+ N+S++P + ++ +   LS
Sbjct: 25  KLSLLEQLGPTIFGPMVFFYSANNSIKPTEQLQMLKKSLS 64


>At5g21970.1 68418.m02553 expressed protein supported by full-length
           cDNA gi:22531216 from [Arabidopsis thaliana]
          Length = 449

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 16/56 (28%), Positives = 26/56 (46%)
 Frame = +3

Query: 396 AGQSD*DYKKNSTLRTPYSVNLKKYIVV*HNTVREKLFVWKNSLIRLFNDQINLFY 563
           AG  + D +  + +    S  L+K +V  H T   + FV    L+R+F     +FY
Sbjct: 288 AGSKEFDKRAIAVMHELLSFTLEKRLVTDHLTHFRREFVMPQKLMRIFLKHCGIFY 343


>At3g25660.1 68416.m03194 glutamyl-tRNA(Gln) amidotransferase,
           putative similar to SP|O06491 Glutamyl-tRNA(Gln)
           amidotransferase subunit A (EC 6.3.5.-) {Bacillus
           subtilis}; contains Pfam profile PF01425: Amidase
          Length = 537

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 13/55 (23%), Positives = 28/55 (50%)
 Frame = +2

Query: 212 RNI*KGETLIHPLSLRYITTLRFCRPVGRSELFSLSEIYKHIRTLQQRLDKGKDI 376
           R++  GET    ++  Y++ +R   P  +  L     + K  + + QR+ KG+++
Sbjct: 51  RSLLSGETTAVEIAKSYLSRIRLTEPQLKCFLHVSENVLKDAQEIDQRIAKGEEL 105


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,177,118
Number of Sequences: 28952
Number of extensions: 306888
Number of successful extensions: 597
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 584
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 597
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1702303248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)