BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e40h0490 (762 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At5g10810.1 68418.m01256 enhancer of rudimentary protein, putati... 59 4e-09 At5g17600.1 68418.m02064 zinc finger (C3HC4-type RING finger) fa... 31 0.63 At3g26040.1 68416.m03243 transferase family protein similar to d... 29 3.4 At5g21970.1 68418.m02553 expressed protein supported by full-len... 28 5.9 At3g25660.1 68416.m03194 glutamyl-tRNA(Gln) amidotransferase, pu... 28 5.9 >At5g10810.1 68418.m01256 enhancer of rudimentary protein, putative identical to enhancer of rudimentary homolog SP:Q96319 from [Arabidopsis thaliana]; contains Pfam profile: PF01133 enhancer of rudimentary Length = 109 Score = 58.8 bits (136), Expect = 4e-09 Identities = 25/59 (42%), Positives = 39/59 (66%) Frame = +3 Query: 222 EKAKP*YTHYHYDISQLFDFVDQLADLSCLVYQKSTNTYAPYNKDWIKEKIYVLLRQAA 398 ++ P + YDI+ L++F+D LADLS LVY S + Y PY++ WIK+K + L++ A Sbjct: 47 KEINPSLRNISYDIADLYNFIDGLADLSALVYDHSISAYLPYDRQWIKQKAFHHLKRIA 105 Score = 55.2 bits (127), Expect = 4e-08 Identities = 22/49 (44%), Positives = 32/49 (65%) Frame = +1 Query: 109 HTILLVQPGPRPETRTYSDYESVNDCMEGVCKIYEEHLKRRNPNTPTIT 255 HTI+L+Q P TRT+ DY+S+ M+G+C +YE LK NP+ I+ Sbjct: 9 HTIILLQNSPSRATRTFMDYDSIGQAMDGICGLYERKLKEINPSLRNIS 57 >At5g17600.1 68418.m02064 zinc finger (C3HC4-type RING finger) family protein contains Pfam profile: PF00097 zinc finger, C3HC4 type (RING finger) Length = 362 Score = 31.5 bits (68), Expect = 0.63 Identities = 10/18 (55%), Positives = 14/18 (77%) Frame = +1 Query: 157 YSDYESVNDCMEGVCKIY 210 +S Y+S NDC +G+C IY Sbjct: 8 WSPYDSYNDCSQGICNIY 25 >At3g26040.1 68416.m03243 transferase family protein similar to deacetylvindoline 4-O-acetyltransferase [Catharanthus roseus][GI:4091808][PMID:9681034], alcohol acyltransferase [Fragaria x ananassa][GI:10121328][PMID:10810141] Length = 442 Score = 29.1 bits (62), Expect = 3.4 Identities = 12/40 (30%), Positives = 24/40 (60%) Frame = -1 Query: 477 QLCIFSSLHCTVFLMLSFFYNLNHSVRPLDAIKHISFPLS 358 +L + L T+F + FFY+ N+S++P + ++ + LS Sbjct: 25 KLSLLEQLGPTIFGPMVFFYSANNSIKPTEQLQMLKKSLS 64 >At5g21970.1 68418.m02553 expressed protein supported by full-length cDNA gi:22531216 from [Arabidopsis thaliana] Length = 449 Score = 28.3 bits (60), Expect = 5.9 Identities = 16/56 (28%), Positives = 26/56 (46%) Frame = +3 Query: 396 AGQSD*DYKKNSTLRTPYSVNLKKYIVV*HNTVREKLFVWKNSLIRLFNDQINLFY 563 AG + D + + + S L+K +V H T + FV L+R+F +FY Sbjct: 288 AGSKEFDKRAIAVMHELLSFTLEKRLVTDHLTHFRREFVMPQKLMRIFLKHCGIFY 343 >At3g25660.1 68416.m03194 glutamyl-tRNA(Gln) amidotransferase, putative similar to SP|O06491 Glutamyl-tRNA(Gln) amidotransferase subunit A (EC 6.3.5.-) {Bacillus subtilis}; contains Pfam profile PF01425: Amidase Length = 537 Score = 28.3 bits (60), Expect = 5.9 Identities = 13/55 (23%), Positives = 28/55 (50%) Frame = +2 Query: 212 RNI*KGETLIHPLSLRYITTLRFCRPVGRSELFSLSEIYKHIRTLQQRLDKGKDI 376 R++ GET ++ Y++ +R P + L + K + + QR+ KG+++ Sbjct: 51 RSLLSGETTAVEIAKSYLSRIRLTEPQLKCFLHVSENVLKDAQEIDQRIAKGEEL 105 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 15,177,118 Number of Sequences: 28952 Number of extensions: 306888 Number of successful extensions: 597 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 584 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 597 length of database: 12,070,560 effective HSP length: 79 effective length of database: 9,783,352 effective search space used: 1702303248 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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