Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0489
(785 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC609.03 |||WD repeat protein, human IQWD1 family|Schizosaccha... 33 0.046
SPBC12C2.14c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual 28 1.7
SPAC27F1.10 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 28 1.7
SPAC1687.01 |rpc19|rpa17, SPAPYUL23.01|DNA-directed RNA polymera... 27 4.0
SPCC1827.02c |||cholinephosphate cytidylyltransferase |Schizosac... 27 4.0
SPCC1322.12c |bub1||serine/threonine protein kinase Bub1|Schizos... 26 5.3
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple... 26 5.3
SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase Rdh54... 26 7.0
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo... 26 7.0
SPBC29B5.02c |isp4||OPT oligopeptide transporter family |Schizos... 25 9.3
>SPBC609.03 |||WD repeat protein, human IQWD1
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 33.1 bits (72), Expect = 0.046
Identities = 23/74 (31%), Positives = 36/74 (48%)
Frame = +2
Query: 122 KNECSCVSKYSPDEPCGTCFPYHVLVPYQALCIPTRFGASS*SEGTQDWLAAREIDFIRH 301
+ +C CV K+SPD G+C +L Y C +F A++ +E W + F H
Sbjct: 243 EKDCRCVRKFSPD---GSCNSQGILDRYITCC---QFSAANPNELLVSWNSDYVYLFHVH 296
Query: 302 EDWPSSSPDLNPLD 343
ED S +P N ++
Sbjct: 297 ED-KSYTPTFNKIE 309
>SPBC12C2.14c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
Length = 111
Score = 27.9 bits (59), Expect = 1.7
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +1
Query: 163 TLWNLFPIPCSGTISGTVYSNKIRRQLIERRHT 261
T+W+ F PCSG T+ I R++ +RR +
Sbjct: 33 TIWSTFGSPCSGDQRVTLSITSILRKVQDRRES 65
>SPAC27F1.10 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 101
Score = 27.9 bits (59), Expect = 1.7
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +3
Query: 48 PSWLMVWLGVSYWGLTE-VHFCEKGVKTNAVVYQNT 152
P WL + L + Y+ LTE + F EK K N ++ +T
Sbjct: 44 PYWLSIRLSLLYFKLTEAISFTEKCEKYNISLFDST 79
>SPAC1687.01 |rpc19|rpa17, SPAPYUL23.01|DNA-directed RNA polymerase
I and III subunit Rpc19 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 125
Score = 26.6 bits (56), Expect = 4.0
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Frame = +2
Query: 332 NPLDYKIWQHLEEKAC--SKPHPNLESLKTSLIKAAADIDMDLVRAAIDD 475
N L Y I ++ E + C S PHP+ + + A + +D++R +DD
Sbjct: 48 NSLRYVIMKNPEVEFCGYSIPHPSEAKMNFRIQTAPSTTAVDVLRKGLDD 97
>SPCC1827.02c |||cholinephosphate cytidylyltransferase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 354
Score = 26.6 bits (56), Expect = 4.0
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +2
Query: 257 TQDWLAAREIDFIRHEDWPSSSPD 328
T ++L +IDF+ H+D P +S D
Sbjct: 171 TPEFLEEHKIDFVAHDDIPYASDD 194
>SPCC1322.12c |bub1||serine/threonine protein kinase
Bub1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1044
Score = 26.2 bits (55), Expect = 5.3
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = -3
Query: 147 FDTQLHSFLHLSHKNVPLLSPNKKLPTIP*ARMENDLVGHAEYGCSL 7
FD L+ LH+S +N+P+ K+ ME LV H+ G L
Sbjct: 990 FDLLLNPTLHVSEENLPMTEELSKIR----IEMEEWLVNHSTGGSGL 1032
>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1522
Score = 26.2 bits (55), Expect = 5.3
Identities = 10/35 (28%), Positives = 15/35 (42%)
Frame = +2
Query: 131 CSCVSKYSPDEPCGTCFPYHVLVPYQALCIPTRFG 235
C + Y P P HV +P+ C+P+ G
Sbjct: 1202 CYYIGSYIMSSPTEGILPEHVRIPFLRKCLPSDEG 1236
>SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase
Rdh54|Schizosaccharomyces pombe|chr 1|||Manual
Length = 811
Score = 25.8 bits (54), Expect = 7.0
Identities = 19/50 (38%), Positives = 25/50 (50%)
Frame = +2
Query: 401 ESLKTSLIKAAADIDMDLVRAAIDDWPRRLKACIQNTEVILNKL*CHKNL 550
E++ T L ID+DL+ I D RLK+ T + LNKL K L
Sbjct: 321 ETVCTYLRNYGCGIDIDLL---ICDEAHRLKSMSSQTWITLNKLKTRKRL 367
>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7
domain|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1811
Score = 25.8 bits (54), Expect = 7.0
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = -1
Query: 599 FIHYVTIHIPK*T*QSIDSYDTKVYSK*PPYFEYR 495
F+++ IP+ +I SY V+S PPYF+Y+
Sbjct: 581 FVYHTLNDIPQLNSSTIGSY---VHSHNPPYFDYQ 612
>SPBC29B5.02c |isp4||OPT oligopeptide transporter family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 785
Score = 25.4 bits (53), Expect = 9.3
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = -3
Query: 198 TRTWYGKQVPQGSSGL 151
T TWYG +P SSG+
Sbjct: 360 TNTWYGDYLPISSSGI 375
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,422,623
Number of Sequences: 5004
Number of extensions: 73660
Number of successful extensions: 192
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -