Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0489
(785 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1387 - 26648977-26649408 32 0.59
02_02_0594 - 11967401-11967832 32 0.59
03_06_0124 - 31830797-31831371,31831510-31831532,31832143-318322... 31 0.79
03_03_0188 + 15269347-15270213 29 3.2
10_08_0448 + 18015609-18016052,18017147-18017248,18017332-180174... 29 5.5
11_04_0069 - 13130590-13130934 28 7.3
08_02_1604 - 28163318-28163347,28164594-28164911 28 7.3
05_01_0515 + 4343067-4344206,4344293-4344478,4344884-4345018,434... 28 7.3
07_03_0750 - 21226896-21227011,21227116-21227370,21227469-212287... 28 9.7
07_01_0505 - 3759254-3759490,3759846-3759989,3760135-3760347,376... 28 9.7
>08_02_1387 - 26648977-26649408
Length = 143
Score = 31.9 bits (69), Expect = 0.59
Identities = 18/47 (38%), Positives = 24/47 (51%)
Frame = +1
Query: 184 IPCSGTISGTVYSNKIRRQLIERRHTRLAGGA*NRLHPARRLALLQP 324
+PC V + +I R++ E R AGG RLHPA L L+ P
Sbjct: 89 LPCDAGEFVAVLA-RIEREMAEERTVGCAGGLVFRLHPAAHLMLVAP 134
>02_02_0594 - 11967401-11967832
Length = 143
Score = 31.9 bits (69), Expect = 0.59
Identities = 18/47 (38%), Positives = 24/47 (51%)
Frame = +1
Query: 184 IPCSGTISGTVYSNKIRRQLIERRHTRLAGGA*NRLHPARRLALLQP 324
+PC V + +I R++ E R AGG RLHPA L L+ P
Sbjct: 89 LPCDAGEFVAVLA-RIEREMAEERTVGCAGGLVFRLHPAAHLMLVAP 134
>03_06_0124 -
31830797-31831371,31831510-31831532,31832143-31832271,
31833287-31834842
Length = 760
Score = 31.5 bits (68), Expect = 0.79
Identities = 26/80 (32%), Positives = 37/80 (46%), Gaps = 9/80 (11%)
Frame = +2
Query: 218 IPTRFGASS*SE-GTQDWLAAREIDFIRHEDWPSSSPDLNPLDYKIWQHLEE-------- 370
I FG S ++ G+++WLA R +DFI D S ++P HLEE
Sbjct: 590 ITGNFGVSGSNDTGSEEWLA-RTLDFIDAHDKEGLSNIVDPSLVVDEDHLEEVWAVSIVA 648
Query: 371 KACSKPHPNLESLKTSLIKA 430
K C P P+ L ++KA
Sbjct: 649 KTCLNPKPSRRPLARYILKA 668
>03_03_0188 + 15269347-15270213
Length = 288
Score = 29.5 bits (63), Expect = 3.2
Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 5/77 (6%)
Frame = -3
Query: 276 AASQSCVPSLYELAPNLVGIHSA*YGTRTWYGKQVPQG-----SSGLYFDTQLHSFLHLS 112
A++ +PS L P G+ +A G + + Q Q SS Y D+ H LH S
Sbjct: 2 ASTSDSLPSSPSL-PTTAGLDAAGGGDQEFSSYQHHQSLFLPSSSSSYLDSPFHGLLHTS 60
Query: 111 HKNVPLLSPNKKLPTIP 61
+ +SP++ P P
Sbjct: 61 SSSSATMSPSQAPPPHP 77
>10_08_0448 + 18015609-18016052,18017147-18017248,18017332-18017475,
18017555-18017705,18017793-18017820,18018456-18018621,
18018701-18018764,18019320-18019423,18019572-18019710,
18020114-18020232,18020333-18020485,18020565-18020654,
18020952-18021029,18021671-18021829,18021914-18022117,
18022209-18022414,18022495-18022630,18022859-18022898,
18023329-18023408,18023569-18024228
Length = 1088
Score = 28.7 bits (61), Expect = 5.5
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Frame = +2
Query: 398 LESLKTSLIKAAADIDMDLVRAA--IDDWPRRLKACIQNTEVILNKL 532
L +K+ A+ + DM+L R D W + + I+ T+VILNKL
Sbjct: 1017 LVEVKSGQADASLNPDMELRRLKQNFDSWKKDFGSRIRETKVILNKL 1063
>11_04_0069 - 13130590-13130934
Length = 114
Score = 28.3 bits (60), Expect = 7.3
Identities = 16/49 (32%), Positives = 21/49 (42%)
Frame = +3
Query: 237 PAHRAKAHKTGWRRVKSTSSGTKTGPPPAQI*IR*ITRYGNTWRKRRAQ 383
P A A K WR + T+S G PA++ + G WR R Q
Sbjct: 49 PGTTATAEKRRWRHEEETASALSAGLCPAELRPASVVE-GGRWRSGRRQ 96
>08_02_1604 - 28163318-28163347,28164594-28164911
Length = 115
Score = 28.3 bits (60), Expect = 7.3
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = -1
Query: 401 PNWDEALSTPFPPS 360
PNWD+ L+ P PPS
Sbjct: 53 PNWDDKLTLPLPPS 66
>05_01_0515 +
4343067-4344206,4344293-4344478,4344884-4345018,
4346652-4346753,4346973-4347068,4347146-4347238,
4347351-4347470,4347580-4347612,4347699-4347749,
4347874-4347952,4348398-4348456
Length = 697
Score = 28.3 bits (60), Expect = 7.3
Identities = 14/35 (40%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
Frame = +3
Query: 198 YHIRHCVFQQDSAPA-HRAK-AHKTGWRRVKSTSS 296
YH+ + ++ D A +RA+ A++T WRRVK +S
Sbjct: 496 YHLNYNTYEDDLAYVRYRARLANETKWRRVKDIAS 530
>07_03_0750 -
21226896-21227011,21227116-21227370,21227469-21228785,
21228918-21228984
Length = 584
Score = 27.9 bits (59), Expect = 9.7
Identities = 30/105 (28%), Positives = 44/105 (41%)
Frame = +2
Query: 23 SACPTRSFSILAHGMVGSFLLGLNRGTFL*ERCKNECSCVSKYSPDEPCGTCFPYHVLVP 202
+ CPT++ +A+ VGS L L C N C +P TCF + LV
Sbjct: 376 NVCPTKASWCVANSAVGSTRLQ----AALDWACSNGADC----GAIQPGKTCFAPNTLVA 427
Query: 203 YQALCIPTRFGASS*SEGTQDWLAAREIDFIRHEDWPSSSPDLNP 337
+ + + S + GT D+ A FI ++ PS D NP
Sbjct: 428 HASYAFNDYYQRKSQASGTCDFSGAA---FIVYKPSPSIC-DPNP 468
>07_01_0505 -
3759254-3759490,3759846-3759989,3760135-3760347,
3760439-3760990,3761339-3761806,3761959-3762023,
3762133-3762265,3763798-3764022
Length = 678
Score = 27.9 bits (59), Expect = 9.7
Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Frame = -3
Query: 342 SNGFKSGLEEGQSSC-RMKSISRAASQSCVPSLYELAPNLVGIHSA*YGTRTWYGKQVPQ 166
SN G Q++ + + S PS+Y A + G + + YG+ WYG +
Sbjct: 279 SNSKSKGQSRNQNTYPHLMGLQTPTSPLGPPSIYS-ASGMYGYNGSSYGSGLWYGSHL-- 335
Query: 165 GSSGLY 148
SGLY
Sbjct: 336 YGSGLY 341
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,296,858
Number of Sequences: 37544
Number of extensions: 495944
Number of successful extensions: 1205
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1204
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2115411120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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