Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0489
(785 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_42850| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 3e-05
SB_30859| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 3e-05
SB_16626| Best HMM Match : DUF1257 (HMM E-Value=3.6) 46 3e-05
SB_21757| Best HMM Match : Hormone_3 (HMM E-Value=3.9) 45 6e-05
SB_56472| Best HMM Match : Transposase_5 (HMM E-Value=1.2) 45 8e-05
SB_1045| Best HMM Match : Hormone_3 (HMM E-Value=3.9) 44 1e-04
SB_49613| Best HMM Match : Transposase_5 (HMM E-Value=0.033) 39 0.005
SB_24457| Best HMM Match : TPR_2 (HMM E-Value=1.4e-16) 31 1.1
SB_19248| Best HMM Match : HECT (HMM E-Value=7.2e-10) 31 1.1
SB_45709| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_43963| Best HMM Match : Ammonium_transp (HMM E-Value=0) 30 1.8
SB_34685| Best HMM Match : RNA_pol_A_bac (HMM E-Value=1.8) 30 1.8
SB_26911| Best HMM Match : Trypsin (HMM E-Value=0) 30 1.8
SB_47663| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.4
SB_21688| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.3
SB_30943| Best HMM Match : Exo_endo_phos (HMM E-Value=4.7e-05) 29 4.3
SB_29477| Best HMM Match : Antistasin (HMM E-Value=9.2) 29 5.6
SB_49079| Best HMM Match : DUF1393 (HMM E-Value=5.8) 28 7.5
SB_37182| Best HMM Match : DUF225 (HMM E-Value=1) 28 9.9
SB_36553| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.9
SB_36147| Best HMM Match : Keratin_B2 (HMM E-Value=1.7) 28 9.9
>SB_42850| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 474
Score = 46.0 bits (104), Expect = 3e-05
Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 4/90 (4%)
Frame = +2
Query: 248 SEGTQDWLAAR-EIDFIRHE---DWPSSSPDLNPLDYKIWQHLEEKACSKPHPNLESLKT 415
+ GT WL R E I +W SPDLNP D+ +W L++ +E LKT
Sbjct: 61 ANGTIAWLRQRFEEKLISRRCDVEWAPHSPDLNPPDFYLWGFLKDNVYQGNPQTIEKLKT 120
Query: 416 SLIKAAADIDMDLVRAAIDDWPRRLKACIQ 505
++ I + I ++ RR++ C+Q
Sbjct: 121 AITAKINAIPKEECIKVIQNFARRVQVCLQ 150
>SB_30859| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 163
Score = 46.0 bits (104), Expect = 3e-05
Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 4/90 (4%)
Frame = +2
Query: 248 SEGTQDWLAAR-EIDFIRHE---DWPSSSPDLNPLDYKIWQHLEEKACSKPHPNLESLKT 415
+ GT WL R E I +W SPDLNP D+ +W L++ +E LKT
Sbjct: 61 ANGTIAWLRQRFEEKLISRRCDVEWAPHSPDLNPPDFYLWGFLKDNVYQGNPQTIEKLKT 120
Query: 416 SLIKAAADIDMDLVRAAIDDWPRRLKACIQ 505
++ I + I ++ RR++ C+Q
Sbjct: 121 AITAKINAIPKEECIKVIQNFARRVQVCLQ 150
>SB_16626| Best HMM Match : DUF1257 (HMM E-Value=3.6)
Length = 267
Score = 46.0 bits (104), Expect = 3e-05
Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 4/90 (4%)
Frame = +2
Query: 248 SEGTQDWLAAR-EIDFIRHE---DWPSSSPDLNPLDYKIWQHLEEKACSKPHPNLESLKT 415
+ GT WL R E I +W SPDLNP D+ +W L++ +E LKT
Sbjct: 9 ANGTIAWLRQRFEEKLISRRCDVEWAPHSPDLNPPDFYLWGFLKDNVYQGNPQTIEKLKT 68
Query: 416 SLIKAAADIDMDLVRAAIDDWPRRLKACIQ 505
++ I + I ++ RR++ C+Q
Sbjct: 69 AITAKINAIPKEECIKVIQNFARRVQVCLQ 98
>SB_21757| Best HMM Match : Hormone_3 (HMM E-Value=3.9)
Length = 254
Score = 45.2 bits (102), Expect = 6e-05
Identities = 26/90 (28%), Positives = 42/90 (46%), Gaps = 4/90 (4%)
Frame = +2
Query: 248 SEGTQDWLAAR-EIDFIRHE---DWPSSSPDLNPLDYKIWQHLEEKACSKPHPNLESLKT 415
+ GT WL R E I +W SPDLNP D+ +W L++ +E LKT
Sbjct: 61 ANGTIAWLRQRFEEKLISRRCDVEWAQHSPDLNPPDFYLWGFLKDNVYQGNPQTIEKLKT 120
Query: 416 SLIKAAADIDMDLVRAAIDDWPRRLKACIQ 505
++ I + I ++ RR++ C++
Sbjct: 121 AITAKINAIPKEECIKVIQNFARRVQVCLE 150
>SB_56472| Best HMM Match : Transposase_5 (HMM E-Value=1.2)
Length = 615
Score = 44.8 bits (101), Expect = 8e-05
Identities = 26/90 (28%), Positives = 42/90 (46%), Gaps = 4/90 (4%)
Frame = +2
Query: 248 SEGTQDWLAAR-EIDFIRHE---DWPSSSPDLNPLDYKIWQHLEEKACSKPHPNLESLKT 415
+ GT WL R E I +W SPDLNP D+ +W L++ +E LKT
Sbjct: 285 ANGTIAWLRQRFEEKLISRRCDVEWAPHSPDLNPPDFYLWGFLKDNVYQGNPQTIEKLKT 344
Query: 416 SLIKAAADIDMDLVRAAIDDWPRRLKACIQ 505
++ I + I ++ RR++ C++
Sbjct: 345 AITAKINAIPKEECIKVIQNFARRVQVCLE 374
>SB_1045| Best HMM Match : Hormone_3 (HMM E-Value=3.9)
Length = 153
Score = 44.4 bits (100), Expect = 1e-04
Identities = 26/90 (28%), Positives = 42/90 (46%), Gaps = 4/90 (4%)
Frame = +2
Query: 248 SEGTQDWLAAR-EIDFIRHE---DWPSSSPDLNPLDYKIWQHLEEKACSKPHPNLESLKT 415
+ GT WL R E I +W SPDLNP D+ +W L++ +E LKT
Sbjct: 61 ANGTIAWLRQRFEEKLISRRCDVEWVPHSPDLNPPDFYLWGFLKDNVYQGNPQTIEKLKT 120
Query: 416 SLIKAAADIDMDLVRAAIDDWPRRLKACIQ 505
++ I + I ++ RR++ C++
Sbjct: 121 AITAKINAIPKEECIKVIQNFARRVQVCLE 150
>SB_49613| Best HMM Match : Transposase_5 (HMM E-Value=0.033)
Length = 999
Score = 38.7 bits (86), Expect = 0.005
Identities = 18/63 (28%), Positives = 31/63 (49%)
Frame = +2
Query: 305 DWPSSSPDLNPLDYKIWQHLEEKACSKPHPNLESLKTSLIKAAADIDMDLVRAAIDDWPR 484
+W SPDLNP D+ +W L++ +E LKT++ I + I ++ R
Sbjct: 693 EWAPHSPDLNPPDFYLWGFLKDNVYQGNPQTIEELKTAITAKIRAIPKEECIKVIQNFAR 752
Query: 485 RLK 493
R++
Sbjct: 753 RVQ 755
>SB_24457| Best HMM Match : TPR_2 (HMM E-Value=1.4e-16)
Length = 1134
Score = 31.1 bits (67), Expect = 1.1
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = +3
Query: 102 HFCEKGVKTNAVVYQNTVLTNLVEPVSHTMFWYHIRHCVFQQDSAPAHR 248
+F K +K++ Y NTV+ +E + FW H++HC + S P R
Sbjct: 841 NFVVKLLKSSYNYYLNTVIGGSLES-NPKKFWSHVKHCRTESCSIPTLR 888
>SB_19248| Best HMM Match : HECT (HMM E-Value=7.2e-10)
Length = 279
Score = 31.1 bits (67), Expect = 1.1
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +2
Query: 338 LDYKIWQHLEEKACSKPHPNLESLKTS 418
LD WQ LE+K C P +E+LK S
Sbjct: 225 LDLITWQELEKKVCGDPEITVEALKKS 251
>SB_45709| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1112
Score = 30.3 bits (65), Expect = 1.8
Identities = 15/41 (36%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
Frame = +2
Query: 116 RCKNECSCVSKYSPDEPC--GTCFPYHVLVPYQALCIPTRF 232
RC E C + S + C TC PY + CIP RF
Sbjct: 401 RCDREFDCTDR-SDERGCVNKTCAPYEFTCAFSGRCIPGRF 440
>SB_43963| Best HMM Match : Ammonium_transp (HMM E-Value=0)
Length = 730
Score = 30.3 bits (65), Expect = 1.8
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Frame = -1
Query: 383 LSTPFPPSVAISCNLTDSN--LGWRRASLRAG*SRFHAPPASLVCLRSMSWRRIL 225
+S P P S+ I N ++N L WRR RA S PA+ RS S+ +L
Sbjct: 651 ISAPEPLSITIIINNLNTNTCLAWRRFHRRAFMSSSRTLPAASKVTRSTSFNHVL 705
>SB_34685| Best HMM Match : RNA_pol_A_bac (HMM E-Value=1.8)
Length = 143
Score = 30.3 bits (65), Expect = 1.8
Identities = 22/65 (33%), Positives = 32/65 (49%)
Frame = -1
Query: 491 SICAASRLSQHERGPCQYRRLP*SRMS*VTPNWDEALSTPFPPSVAISCNLTDSNLGWRR 312
S+ A+S L Q +G C RRL S VTP + ++ S ++C DS +R
Sbjct: 32 SVRASSLLRQLAKGGCAARRL-----SWVTPGFSQSRRCKTTASAKLACLQVDSRGSPKR 86
Query: 311 ASLRA 297
+LRA
Sbjct: 87 MTLRA 91
>SB_26911| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 349
Score = 30.3 bits (65), Expect = 1.8
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +3
Query: 213 CVFQQDSAPAHRAKAHKTGWRRVKSTSSGTKTGPPPAQ 326
C F +D+ K+ K+ W R T+ T TGP Q
Sbjct: 38 CNFDRDTCDFINLKSDKSDWTRKSGTTPSTGTGPSSGQ 75
>SB_47663| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1409
Score = 29.9 bits (64), Expect = 2.4
Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 4/69 (5%)
Frame = -1
Query: 512 PYFEYRPSICAASRLSQHERGPCQYRRLP*SRMS*VTPNWDEAL----STPFPPSVAISC 345
PY + C+ R+ + + CQ + P +R + NW L S P P+V C
Sbjct: 602 PYPAHGGKDCSGERIQEEK---CQTKACPANRSGNRSSNWRRHLHPPSSRPSGPAVKAYC 658
Query: 344 NLTDSNLGW 318
++T GW
Sbjct: 659 DMTRDGGGW 667
>SB_21688| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1078
Score = 29.1 bits (62), Expect = 4.3
Identities = 19/43 (44%), Positives = 25/43 (58%)
Frame = +3
Query: 222 QQDSAPAHRAKAHKTGWRRVKSTSSGTKTGPPPAQI*IR*ITR 350
Q+++AP A TGW V S SSGT T P P Q +R ++R
Sbjct: 510 QKENAPP-AAAITSTGWIVVGSGSSGTPTTPEP-QTPVRKLSR 550
>SB_30943| Best HMM Match : Exo_endo_phos (HMM E-Value=4.7e-05)
Length = 354
Score = 29.1 bits (62), Expect = 4.3
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = -2
Query: 322 AGGGPVFVPDEVDFTRRQPVLCAFAL*AGAESCW 221
AGG +++ E+DF RR+ + A G ESCW
Sbjct: 56 AGGVGIYISHELDFIRRRDLEIAE---GGIESCW 86
>SB_29477| Best HMM Match : Antistasin (HMM E-Value=9.2)
Length = 73
Score = 28.7 bits (61), Expect = 5.6
Identities = 19/54 (35%), Positives = 27/54 (50%)
Frame = -1
Query: 491 SICAASRLSQHERGPCQYRRLP*SRMS*VTPNWDEALSTPFPPSVAISCNLTDS 330
S+ A+S L Q +G C RRL S VTP + ++ PS ++C DS
Sbjct: 10 SVRASSLLRQLAKGGCAARRL-----SWVTPGFSQSRRCKTTPSAKLACLQVDS 58
>SB_49079| Best HMM Match : DUF1393 (HMM E-Value=5.8)
Length = 299
Score = 28.3 bits (60), Expect = 7.5
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +2
Query: 311 PSSSPDLNPLDYKIWQHLEEKACSKPHPNLESLKTSLIKAAADID 445
PSS+PD +D+ +W LEE+ + +E + +A+ D
Sbjct: 83 PSSNPDSPIVDFDLWSELEEEVLNYVVETVEPTQEMFFVDSAEDD 127
>SB_37182| Best HMM Match : DUF225 (HMM E-Value=1)
Length = 1282
Score = 27.9 bits (59), Expect = 9.9
Identities = 14/27 (51%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Frame = +2
Query: 152 SPDEPCGT-CFPYHVLVPYQALCIPTR 229
SP+ PC CFPYHVL+ ++C P+R
Sbjct: 214 SPN-PCSCRCFPYHVLM---SMCSPSR 236
>SB_36553| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 684
Score = 27.9 bits (59), Expect = 9.9
Identities = 9/25 (36%), Positives = 17/25 (68%)
Frame = +3
Query: 114 KGVKTNAVVYQNTVLTNLVEPVSHT 188
+G +A VY++ + N ++PV+HT
Sbjct: 564 RGALNSAAVYKDPITMNTIDPVTHT 588
>SB_36147| Best HMM Match : Keratin_B2 (HMM E-Value=1.7)
Length = 533
Score = 27.9 bits (59), Expect = 9.9
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +2
Query: 152 SPDEPCGTCFPYHVLVPYQALCIPTR 229
SP+ CFPYHVL+ ++C P+R
Sbjct: 149 SPNTCSCRCFPYHVLM---SMCFPSR 171
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,350,331
Number of Sequences: 59808
Number of extensions: 549574
Number of successful extensions: 1723
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1607
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1719
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2155861620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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