Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0489
         (785 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF098501-8|AAC67403.1|  459|Caenorhabditis elegans Hypothetical ...   101   4e-22
X01005-1|CAA25498.1|  273|Caenorhabditis elegans protein ( Caeno...    52   4e-07
U29097-9|AAA68416.2|  343|Caenorhabditis elegans Hypothetical pr...    52   4e-07
AF067947-2|AAC19229.2|  273|Caenorhabditis elegans Hypothetical ...    52   4e-07
AF067947-1|AAC19233.1|  273|Caenorhabditis elegans Hypothetical ...    52   4e-07
AF016682-7|AAB66191.2|  343|Caenorhabditis elegans Hypothetical ...    52   4e-07
U39743-1|AAA80436.2|  314|Caenorhabditis elegans Hypothetical pr...    52   5e-07
AF125450-4|AAD12818.1|  343|Caenorhabditis elegans Hypothetical ...    52   5e-07
U49941-9|AAB53871.1|  141|Caenorhabditis elegans Hypothetical pr...    42   4e-04
U23174-5|AAC46711.1|  329|Caenorhabditis elegans Hypothetical pr...    42   4e-04
AF106576-3|AAK68401.1|  329|Caenorhabditis elegans Hypothetical ...    42   4e-04
AC006671-2|AAO21381.1|  459|Caenorhabditis elegans Nuclear hormo...    42   4e-04
AC006769-12|AAF60591.1|  384|Caenorhabditis elegans Hypothetical...    31   0.71 
U58746-8|AAB00629.1|  339|Caenorhabditis elegans Hypothetical pr...    29   2.9  
AC024800-4|AAF60722.1|  514|Caenorhabditis elegans Hypothetical ...    29   2.9  
U88175-4|AAB42279.1|  440|Caenorhabditis elegans Hypothetical pr...    29   5.0  

>AF098501-8|AAC67403.1|  459|Caenorhabditis elegans Hypothetical
           protein H28G03.4 protein.
          Length = 459

 Score =  101 bits (243), Expect = 4e-22
 Identities = 45/91 (49%), Positives = 61/91 (67%)
 Frame = +2

Query: 251 EGTQDWLAAREIDFIRHEDWPSSSPDLNPLDYKIWQHLEEKACSKPHPNLESLKTSLIKA 430
           +  Q W  +   DFI    WP SSPDLNP+DY +W  LE KACSKPH N++SLK SL KA
Sbjct: 318 KNVQAWCESNFPDFIAFNQWPPSSPDLNPMDYSVWSVLEAKACSKPHRNIDSLKDSLKKA 377

Query: 431 AADIDMDLVRAAIDDWPRRLKACIQNTEVIL 523
             ++D++ +RA +D +PRRL+A  +   +IL
Sbjct: 378 WDELDINYLRATVDSFPRRLEASRELLTIIL 408



 Score = 45.6 bits (103), Expect = 4e-05
 Identities = 27/76 (35%), Positives = 40/76 (52%)
 Frame = +3

Query: 27  RVQRGHFPSWLMVWLGVSYWGLTEVHFCEKGVKTNAVVYQNTVLTNLVEPVSHTMFWYHI 206
           RVQR  +P  +MV+ G++  G T + F  +G+K N   Y + + T L+  V      +  
Sbjct: 246 RVQRTGYPKGIMVFAGITANGKTPLIFVPQGIKVNGNNYLDMLKTELMPWVKK---HFKK 302

Query: 207 RHCVFQQDSAPAHRAK 254
               FQQD APAH+ K
Sbjct: 303 TKWTFQQDGAPAHKHK 318


>X01005-1|CAA25498.1|  273|Caenorhabditis elegans protein (
           Caenorhabditis eleganstransposable element Tc1. ).
          Length = 273

 Score = 52.4 bits (120), Expect = 4e-07
 Identities = 27/81 (33%), Positives = 41/81 (50%)
 Frame = +2

Query: 260 QDWLAAREIDFIRHEDWPSSSPDLNPLDYKIWQHLEEKACSKPHPNLESLKTSLIKAAAD 439
           + W   R +  +   DWPS SPDLNP+++ +W+ LE +       N ++    L  A   
Sbjct: 188 RSWFQRRHVHLL---DWPSQSPDLNPIEH-LWEELERRLGGIRASNADAKFNQLENAWKA 243

Query: 440 IDMDLVRAAIDDWPRRLKACI 502
           I M ++   ID  PRR +A I
Sbjct: 244 IPMSVIHKLIDSMPRRCQAVI 264


>U29097-9|AAA68416.2|  343|Caenorhabditis elegans Hypothetical
           protein F18C5.7 protein.
          Length = 343

 Score = 52.4 bits (120), Expect = 4e-07
 Identities = 27/81 (33%), Positives = 41/81 (50%)
 Frame = +2

Query: 260 QDWLAAREIDFIRHEDWPSSSPDLNPLDYKIWQHLEEKACSKPHPNLESLKTSLIKAAAD 439
           + W   R +  +   DWPS SPDLNP+++ +W+ LE +       N ++    L  A   
Sbjct: 258 RSWFQRRRVHLL---DWPSQSPDLNPIEH-LWEELERRLGGIRASNADAKFNQLENAWKA 313

Query: 440 IDMDLVRAAIDDWPRRLKACI 502
           I M ++   ID  PRR +A I
Sbjct: 314 IPMSVIHKLIDSMPRRCQAVI 334


>AF067947-2|AAC19229.2|  273|Caenorhabditis elegans Hypothetical
           protein T10B5.9 protein.
          Length = 273

 Score = 52.4 bits (120), Expect = 4e-07
 Identities = 27/81 (33%), Positives = 41/81 (50%)
 Frame = +2

Query: 260 QDWLAAREIDFIRHEDWPSSSPDLNPLDYKIWQHLEEKACSKPHPNLESLKTSLIKAAAD 439
           + W   R +  +   DWPS SPDLNP+++ +W+ LE +       N ++    L  A   
Sbjct: 188 RSWFQRRRVHLL---DWPSQSPDLNPIEH-LWEELERRLGGIRASNADAKFNQLENAWKA 243

Query: 440 IDMDLVRAAIDDWPRRLKACI 502
           I M ++   ID  PRR +A I
Sbjct: 244 IPMSVIHKLIDSMPRRCQAVI 264


>AF067947-1|AAC19233.1|  273|Caenorhabditis elegans Hypothetical
           protein T10B5.1 protein.
          Length = 273

 Score = 52.4 bits (120), Expect = 4e-07
 Identities = 27/81 (33%), Positives = 41/81 (50%)
 Frame = +2

Query: 260 QDWLAAREIDFIRHEDWPSSSPDLNPLDYKIWQHLEEKACSKPHPNLESLKTSLIKAAAD 439
           + W   R +  +   DWPS SPDLNP+++ +W+ LE +       N ++    L  A   
Sbjct: 188 RSWFQRRRVHLL---DWPSQSPDLNPIEH-LWEELERRLGGIRASNADAKFNQLENAWKA 243

Query: 440 IDMDLVRAAIDDWPRRLKACI 502
           I M ++   ID  PRR +A I
Sbjct: 244 IPMSVIHKLIDSMPRRCQAVI 264


>AF016682-7|AAB66191.2|  343|Caenorhabditis elegans Hypothetical
           protein T07D3.8 protein.
          Length = 343

 Score = 52.4 bits (120), Expect = 4e-07
 Identities = 27/81 (33%), Positives = 41/81 (50%)
 Frame = +2

Query: 260 QDWLAAREIDFIRHEDWPSSSPDLNPLDYKIWQHLEEKACSKPHPNLESLKTSLIKAAAD 439
           + W   R +  +   DWPS SPDLNP+++ +W+ LE +       N ++    L  A   
Sbjct: 258 RSWFQRRHVHLL---DWPSQSPDLNPIEH-LWEELERRLGGIRASNADAKFNQLENAWKA 313

Query: 440 IDMDLVRAAIDDWPRRLKACI 502
           I M ++   ID  PRR +A I
Sbjct: 314 IPMSVIHKLIDSMPRRCQAVI 334


>U39743-1|AAA80436.2|  314|Caenorhabditis elegans Hypothetical
           protein R173.2 protein.
          Length = 314

 Score = 52.0 bits (119), Expect = 5e-07
 Identities = 27/81 (33%), Positives = 41/81 (50%)
 Frame = +2

Query: 260 QDWLAAREIDFIRHEDWPSSSPDLNPLDYKIWQHLEEKACSKPHPNLESLKTSLIKAAAD 439
           + W   R +  +   DWPS SPDLNP+++ +W+ LE +       N ++    L  A   
Sbjct: 229 RSWFQRRRVHLL---DWPSQSPDLNPIEH-LWEELERRLGGIRASNADAKFNQLENAWKA 284

Query: 440 IDMDLVRAAIDDWPRRLKACI 502
           I M ++   ID  PRR +A I
Sbjct: 285 IPMSVIHKLIDSMPRRCQAFI 305


>AF125450-4|AAD12818.1|  343|Caenorhabditis elegans Hypothetical
           protein Y39F10A.4 protein.
          Length = 343

 Score = 52.0 bits (119), Expect = 5e-07
 Identities = 27/81 (33%), Positives = 41/81 (50%)
 Frame = +2

Query: 260 QDWLAAREIDFIRHEDWPSSSPDLNPLDYKIWQHLEEKACSKPHPNLESLKTSLIKAAAD 439
           + W   R +  +   DWPS SPDLNP+++ +W+ LE +       N ++    L  A   
Sbjct: 258 RSWFQRRHVHLL---DWPSQSPDLNPIEH-LWEKLERRLGGIRASNADAKFNQLENAWKA 313

Query: 440 IDMDLVRAAIDDWPRRLKACI 502
           I M ++   ID  PRR +A I
Sbjct: 314 IPMSVIHKLIDSMPRRCQAVI 334


>U49941-9|AAB53871.1|  141|Caenorhabditis elegans Hypothetical
           protein K10B3.2 protein.
          Length = 141

 Score = 42.3 bits (95), Expect = 4e-04
 Identities = 25/83 (30%), Positives = 45/83 (54%), Gaps = 2/83 (2%)
 Frame = +2

Query: 248 SEGTQDWLAAREIDFIRHEDWPSSSPDLNPLDYKIWQHLEE--KACSKPHPNLESLKTSL 421
           S  T+D+   ++I+ +   DWP+ SPDLNP++  +W  L     A +K +P + SLK  +
Sbjct: 50  SNSTRDYFKLKKINLL---DWPARSPDLNPIE-NLWGILVRIVYAQNKTYPTVASLKQGI 105

Query: 422 IKAAADIDMDLVRAAIDDWPRRL 490
           + A   I  + +++ +     RL
Sbjct: 106 LDAWKSIPDNQLKSLVRSMEDRL 128


>U23174-5|AAC46711.1|  329|Caenorhabditis elegans Hypothetical
           protein R10H1.3 protein.
          Length = 329

 Score = 42.3 bits (95), Expect = 4e-04
 Identities = 25/83 (30%), Positives = 45/83 (54%), Gaps = 2/83 (2%)
 Frame = +2

Query: 248 SEGTQDWLAAREIDFIRHEDWPSSSPDLNPLDYKIWQHLEE--KACSKPHPNLESLKTSL 421
           S  T+D+   ++I+ +   DWP+ SPDLNP++  +W  L     A +K +P + SLK  +
Sbjct: 238 SNSTRDYFKLKKINLL---DWPARSPDLNPIE-NLWGILVRIVYAQNKTYPTVASLKQGI 293

Query: 422 IKAAADIDMDLVRAAIDDWPRRL 490
           + A   I  + +++ +     RL
Sbjct: 294 LDAWKSIPDNQLKSLVRSMEDRL 316


>AF106576-3|AAK68401.1|  329|Caenorhabditis elegans Hypothetical
           protein W07E6.6 protein.
          Length = 329

 Score = 42.3 bits (95), Expect = 4e-04
 Identities = 25/83 (30%), Positives = 45/83 (54%), Gaps = 2/83 (2%)
 Frame = +2

Query: 248 SEGTQDWLAAREIDFIRHEDWPSSSPDLNPLDYKIWQHLEE--KACSKPHPNLESLKTSL 421
           S  T+D+   ++I+ +   DWP+ SPDLNP++  +W  L     A +K +P + SLK  +
Sbjct: 238 SNSTRDYFKLKKINLL---DWPARSPDLNPIE-NLWGILVRIVYAQNKTYPTVASLKQGI 293

Query: 422 IKAAADIDMDLVRAAIDDWPRRL 490
           + A   I  + +++ +     RL
Sbjct: 294 LDAWKSIPDNQLKSLVRSMEDRL 316


>AC006671-2|AAO21381.1|  459|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 88, isoform b protein.
          Length = 459

 Score = 42.3 bits (95), Expect = 4e-04
 Identities = 25/83 (30%), Positives = 45/83 (54%), Gaps = 2/83 (2%)
 Frame = +2

Query: 248 SEGTQDWLAAREIDFIRHEDWPSSSPDLNPLDYKIWQHLEE--KACSKPHPNLESLKTSL 421
           S  T+D+   ++I+ +   DWP+ SPDLNP++  +W  L     A +K +P + SLK  +
Sbjct: 368 SNSTRDYFKLKKINLL---DWPARSPDLNPIE-NLWGILVRIVYAQNKTYPTVASLKQGI 423

Query: 422 IKAAADIDMDLVRAAIDDWPRRL 490
           + A   I  + +++ +     RL
Sbjct: 424 LDAWKSIPDNQLKSLVRSMEDRL 446


>AC006769-12|AAF60591.1|  384|Caenorhabditis elegans Hypothetical
           protein Y45G12C.13 protein.
          Length = 384

 Score = 31.5 bits (68), Expect = 0.71
 Identities = 20/69 (28%), Positives = 28/69 (40%)
 Frame = +2

Query: 311 PSSSPDLNPLDYKIWQHLEEKACSKPHPNLESLKTSLIKAAADIDMDLVRAAIDDWPRRL 490
           P  SPDL P DY ++  L +    K   + E LKT L    +    D     I   P + 
Sbjct: 267 PPYSPDLAPTDYHLFLSLSDYMRDKQFDDEEHLKTELSTFFSSRSPDFFSRGIMMLPSKW 326

Query: 491 KACIQNTEV 517
           +  +   EV
Sbjct: 327 QQVVDTNEV 335


>U58746-8|AAB00629.1|  339|Caenorhabditis elegans Hypothetical
           protein R05G6.2 protein.
          Length = 339

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +2

Query: 311 PSSSPDLNPLDYKIWQHLEEKACSKPHPNLESLKTSL 421
           P  SPDL P DY ++  L +    K   + E LKT L
Sbjct: 267 PPYSPDLAPTDYHLFLSLSDYMRDKQFDDEEHLKTEL 303


>AC024800-4|AAF60722.1|  514|Caenorhabditis elegans Hypothetical
           protein Y49F6A.4 protein.
          Length = 514

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +2

Query: 311 PSSSPDLNPLDYKIWQHLEEKACSKPHPNLESLKTSL 421
           P  SPDL P DY ++  L +    K   + E LKT L
Sbjct: 242 PPYSPDLAPTDYHLFLSLSDYMRDKQFDDEEHLKTEL 278


>U88175-4|AAB42279.1|  440|Caenorhabditis elegans Hypothetical
           protein F21F3.2 protein.
          Length = 440

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +3

Query: 231 SAPAHRAKAHKTGWRRVKSTSSGTKTGPPPAQ 326
           SAP  R++++KT     KST       PPP Q
Sbjct: 406 SAPGKRSESNKTAAIAKKSTMKSVMNAPPPRQ 437


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,802,852
Number of Sequences: 27780
Number of extensions: 411624
Number of successful extensions: 1052
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 992
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1051
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1903721438
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)