Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0489
         (785 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   2.4  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   2.4  
EF051030-1|ABN05618.1|  118|Apis mellifera phosphoenolpyruvate c...    22   7.4  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    22   7.4  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   7.4  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +2

Query: 455 VRAAIDDWPRRLK 493
           + AA+D+WPR L+
Sbjct: 400 ITAAVDEWPRLLR 412


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +2

Query: 455 VRAAIDDWPRRLK 493
           + AA+D+WPR L+
Sbjct: 453 ITAAVDEWPRLLR 465


>EF051030-1|ABN05618.1|  118|Apis mellifera phosphoenolpyruvate
           carboxykinase protein.
          Length = 118

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 6/20 (30%), Positives = 12/20 (60%)
 Frame = +3

Query: 138 VYQNTVLTNLVEPVSHTMFW 197
           +++NT+ TN+       +FW
Sbjct: 85  IFKNTIFTNVASTSDGGIFW 104


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 6/16 (37%), Positives = 14/16 (87%)
 Frame = +3

Query: 57  LMVWLGVSYWGLTEVH 104
           L+++LG++  G+T++H
Sbjct: 6   LLMYLGITCQGVTDIH 21


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -2

Query: 313 GPVFVPDEVDFTRRQP 266
           G V+  DEV+F +R+P
Sbjct: 570 GAVWTVDEVEFYKRRP 585


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 231,286
Number of Sequences: 438
Number of extensions: 5569
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24760908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)