Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0489
         (785 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g60040.1 68418.m07529 DNA-directed RNA polymerase, putative s...    30   2.0  
At5g53550.1 68418.m06654 transporter, putative similar to iron-p...    29   3.5  
At4g30100.1 68417.m04280 tRNA-splicing endonuclease positive eff...    29   4.6  
At4g29150.1 68417.m04171 calmodulin-binding family protein conta...    28   6.1  
At1g80010.1 68414.m09362 far-red impaired responsive protein, pu...    28   6.1  

>At5g60040.1 68418.m07529 DNA-directed RNA polymerase, putative
            similar to SP|P04051 DNA-directed RNA polymerase III
            largest subunit (EC 2.7.7.6) {Saccharomyces cerevisiae};
            contains InterPro accession IPR000722: RNA polymerase,
            alpha subunit
          Length = 1328

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 22/65 (33%), Positives = 33/65 (50%)
 Frame = -2

Query: 616  KIIETSLFIM*PFIYQNELNKA*ILMTLKFIQNDLRILNTGLQSARPVVYRSTNEVHVNI 437
            KIIE +   + P+  +N + K      +K   ND+R+L+TGL    PVV +S    H N+
Sbjct: 1086 KIIEEACLSITPWSVKNSILKT---PRIKLNDNDIRVLDTGL-DITPVVDKS--RAHFNL 1139

Query: 436  GGCLN 422
                N
Sbjct: 1140 HNLKN 1144


>At5g53550.1 68418.m06654 transporter, putative similar to
           iron-phytosiderophore transporter protein yellow stripe
           1 [Zea mays] GI:10770865; contains Pfam profile PF03169:
           OPT oligopeptide transporter protein
          Length = 669

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +2

Query: 29  CPTRSFSILAHGMVGSFLLGLNRGTF 106
           C    +SI   G  GS+LLGLNR T+
Sbjct: 114 CAVACYSIAVGGGFGSYLLGLNRITY 139


>At4g30100.1 68417.m04280 tRNA-splicing endonuclease positive
           effector-related contains similarity to SEN1, a positive
           effector of tRNA-splicing endonuclease [Saccharomyces
           cerevisiae] gi|172574|gb|AAB63976
          Length = 1311

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +3

Query: 126 TNAVVYQNTVLTNLVEPVSHTMFWYH 203
           TN+  YQ+T +  L+  V++  FW+H
Sbjct: 387 TNSTQYQDTSVERLLREVTNEKFWHH 412


>At4g29150.1 68417.m04171 calmodulin-binding family protein contains
           Pfam profile PF00612: IQ calmodulin-binding motif
          Length = 383

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = +1

Query: 166 LWNLFPIPCSGTISGTVYSNKIRRQLIERRHT 261
           L+ + P  CSGT SGT+ SN++ R L +   T
Sbjct: 11  LFGIKPSSCSGTDSGTI-SNRLDRSLCDSYET 41


>At1g80010.1 68414.m09362 far-red impaired responsive protein,
           putative similar to far-red impaired response protein
           FAR1 [Arabidopsis thaliana] gi|5764395|gb|AAD51282
          Length = 696

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +3

Query: 228 DSAPAHRAKAHKTGWRRVKSTSSGTKTGP-PPAQI*IR*ITRY 353
           D   AH +K+HK   +   S S  TKT P PP  + +R I  Y
Sbjct: 164 DPQRAHNSKSHK---KSSSSASPATKTNPEPPPHVQVRTIKLY 203


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,781,679
Number of Sequences: 28952
Number of extensions: 383202
Number of successful extensions: 972
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 944
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 972
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1765546400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)