BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e40h0489 (785 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At5g60040.1 68418.m07529 DNA-directed RNA polymerase, putative s... 30 2.0 At5g53550.1 68418.m06654 transporter, putative similar to iron-p... 29 3.5 At4g30100.1 68417.m04280 tRNA-splicing endonuclease positive eff... 29 4.6 At4g29150.1 68417.m04171 calmodulin-binding family protein conta... 28 6.1 At1g80010.1 68414.m09362 far-red impaired responsive protein, pu... 28 6.1 >At5g60040.1 68418.m07529 DNA-directed RNA polymerase, putative similar to SP|P04051 DNA-directed RNA polymerase III largest subunit (EC 2.7.7.6) {Saccharomyces cerevisiae}; contains InterPro accession IPR000722: RNA polymerase, alpha subunit Length = 1328 Score = 29.9 bits (64), Expect = 2.0 Identities = 22/65 (33%), Positives = 33/65 (50%) Frame = -2 Query: 616 KIIETSLFIM*PFIYQNELNKA*ILMTLKFIQNDLRILNTGLQSARPVVYRSTNEVHVNI 437 KIIE + + P+ +N + K +K ND+R+L+TGL PVV +S H N+ Sbjct: 1086 KIIEEACLSITPWSVKNSILKT---PRIKLNDNDIRVLDTGL-DITPVVDKS--RAHFNL 1139 Query: 436 GGCLN 422 N Sbjct: 1140 HNLKN 1144 >At5g53550.1 68418.m06654 transporter, putative similar to iron-phytosiderophore transporter protein yellow stripe 1 [Zea mays] GI:10770865; contains Pfam profile PF03169: OPT oligopeptide transporter protein Length = 669 Score = 29.1 bits (62), Expect = 3.5 Identities = 13/26 (50%), Positives = 16/26 (61%) Frame = +2 Query: 29 CPTRSFSILAHGMVGSFLLGLNRGTF 106 C +SI G GS+LLGLNR T+ Sbjct: 114 CAVACYSIAVGGGFGSYLLGLNRITY 139 >At4g30100.1 68417.m04280 tRNA-splicing endonuclease positive effector-related contains similarity to SEN1, a positive effector of tRNA-splicing endonuclease [Saccharomyces cerevisiae] gi|172574|gb|AAB63976 Length = 1311 Score = 28.7 bits (61), Expect = 4.6 Identities = 10/26 (38%), Positives = 17/26 (65%) Frame = +3 Query: 126 TNAVVYQNTVLTNLVEPVSHTMFWYH 203 TN+ YQ+T + L+ V++ FW+H Sbjct: 387 TNSTQYQDTSVERLLREVTNEKFWHH 412 >At4g29150.1 68417.m04171 calmodulin-binding family protein contains Pfam profile PF00612: IQ calmodulin-binding motif Length = 383 Score = 28.3 bits (60), Expect = 6.1 Identities = 14/32 (43%), Positives = 20/32 (62%) Frame = +1 Query: 166 LWNLFPIPCSGTISGTVYSNKIRRQLIERRHT 261 L+ + P CSGT SGT+ SN++ R L + T Sbjct: 11 LFGIKPSSCSGTDSGTI-SNRLDRSLCDSYET 41 >At1g80010.1 68414.m09362 far-red impaired responsive protein, putative similar to far-red impaired response protein FAR1 [Arabidopsis thaliana] gi|5764395|gb|AAD51282 Length = 696 Score = 28.3 bits (60), Expect = 6.1 Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 1/43 (2%) Frame = +3 Query: 228 DSAPAHRAKAHKTGWRRVKSTSSGTKTGP-PPAQI*IR*ITRY 353 D AH +K+HK + S S TKT P PP + +R I Y Sbjct: 164 DPQRAHNSKSHK---KSSSSASPATKTNPEPPPHVQVRTIKLY 203 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 17,781,679 Number of Sequences: 28952 Number of extensions: 383202 Number of successful extensions: 972 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 944 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 972 length of database: 12,070,560 effective HSP length: 80 effective length of database: 9,754,400 effective search space used: 1765546400 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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