Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0488
         (719 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16E9.09c |||COPII vesicle coat component Erp5/Erp6|Schizosac...    27   2.7  
SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1 |S...    27   3.6  
SPBC1271.01c |pof13||F-box protein Pof13|Schizosaccharomyces pom...    26   6.2  

>SPBC16E9.09c |||COPII vesicle coat component
           Erp5/Erp6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 215

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = -2

Query: 658 KVSLSSTLNVKFDTTNNTFHRFCYFKNN 575
           K  L S   V+F TTN   HR CY   +
Sbjct: 82  KNDLRSNEAVRFTTTNEGTHRICYLSTS 109


>SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 551

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 8/23 (34%), Positives = 17/23 (73%)
 Frame = +2

Query: 569 FRIVFEVTKTVECIVCCIKFYIQ 637
           +R++FE+ K +EC   C++++ Q
Sbjct: 48  WRLLFELQKMIECEPSCVEYFRQ 70


>SPBC1271.01c |pof13||F-box protein Pof13|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 396

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 11/42 (26%), Positives = 23/42 (54%)
 Frame = -3

Query: 162 IVSSVFAYFDSYILYFLKHSL*EPFFLFQYTKINNTCESNNF 37
           I S +  Y D++ +  L HS  + ++  + + ++  C +NNF
Sbjct: 51  IWSLIINYLDAFDILRLMHSSRQFYYWLRKSAVDECCFNNNF 92


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,749,081
Number of Sequences: 5004
Number of extensions: 55418
Number of successful extensions: 113
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)