BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e40h0488 (719 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC16E9.09c |||COPII vesicle coat component Erp5/Erp6|Schizosac... 27 2.7 SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1 |S... 27 3.6 SPBC1271.01c |pof13||F-box protein Pof13|Schizosaccharomyces pom... 26 6.2 >SPBC16E9.09c |||COPII vesicle coat component Erp5/Erp6|Schizosaccharomyces pombe|chr 2|||Manual Length = 215 Score = 27.1 bits (57), Expect = 2.7 Identities = 12/28 (42%), Positives = 14/28 (50%) Frame = -2 Query: 658 KVSLSSTLNVKFDTTNNTFHRFCYFKNN 575 K L S V+F TTN HR CY + Sbjct: 82 KNDLRSNEAVRFTTTNEGTHRICYLSTS 109 >SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1 |Schizosaccharomyces pombe|chr 2|||Manual Length = 551 Score = 26.6 bits (56), Expect = 3.6 Identities = 8/23 (34%), Positives = 17/23 (73%) Frame = +2 Query: 569 FRIVFEVTKTVECIVCCIKFYIQ 637 +R++FE+ K +EC C++++ Q Sbjct: 48 WRLLFELQKMIECEPSCVEYFRQ 70 >SPBC1271.01c |pof13||F-box protein Pof13|Schizosaccharomyces pombe|chr 2|||Manual Length = 396 Score = 25.8 bits (54), Expect = 6.2 Identities = 11/42 (26%), Positives = 23/42 (54%) Frame = -3 Query: 162 IVSSVFAYFDSYILYFLKHSL*EPFFLFQYTKINNTCESNNF 37 I S + Y D++ + L HS + ++ + + ++ C +NNF Sbjct: 51 IWSLIINYLDAFDILRLMHSSRQFYYWLRKSAVDECCFNNNF 92 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,749,081 Number of Sequences: 5004 Number of extensions: 55418 Number of successful extensions: 113 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 110 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 113 length of database: 2,362,478 effective HSP length: 71 effective length of database: 2,007,194 effective search space used: 337208592 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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