Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0488
         (719 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    23   2.2  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   2.9  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    23   3.8  
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        22   5.1  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    22   5.1  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   5.1  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    21   8.9  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   8.9  

>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 10/27 (37%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = -2

Query: 439 KQFSCSQRNTSCLIKQLIN-HERLYSN 362
           K F C + + SC+ K ++N H + +SN
Sbjct: 15  KPFKCEKCSYSCVNKSMLNSHLKSHSN 41


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 11/40 (27%), Positives = 18/40 (45%)
 Frame = -2

Query: 697 LGRVYRNYLDL*IKVSLSSTLNVKFDTTNNTFHRFCYFKN 578
           L R+Y++Y +   K +    L +     +NT    C  KN
Sbjct: 450 LNRMYKSYPNYIDKETKDMNLEISTRPKSNTVENACVLKN 489


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 13/36 (36%), Positives = 16/36 (44%)
 Frame = -1

Query: 155 LVYLRTSTLIFYISLNIXXXXXXXXXNTPKSIILVK 48
           L Y  TST  F+ S  +          T K +ILVK
Sbjct: 18  LYYYLTSTFDFWKSRGVVGPKPVPFFGTTKDLILVK 53


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +3

Query: 456 KC*KLRKYYNGNKQRAINRKSCFNYVND 539
           KC + R+Y N     A+ R +  N  ND
Sbjct: 344 KCLQFREYLNNELGPAVKRIALNNNAND 371


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = -2

Query: 634 NVKFDTTNNTFHRFCYFKN 578
           N K++  NN +++  Y+KN
Sbjct: 101 NNKYNYNNNNYNKKLYYKN 119


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 13/30 (43%), Positives = 15/30 (50%), Gaps = 4/30 (13%)
 Frame = -3

Query: 126 ILYF----LKHSL*EPFFLFQYTKINNTCE 49
           ILYF    L H + E F+  QY    N CE
Sbjct: 441 ILYFRCSNLNHMMREEFYQSQYGDPINNCE 470


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -2

Query: 373 LYSNSSFNWFRISINTFLY 317
           +Y NS  ++ R++ NTF Y
Sbjct: 218 MYQNSDDSFHRLTSNTFDY 236


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +3

Query: 513 KSCFNYVNDTRKSNLILFN 569
           K C N   +  K NL+L+N
Sbjct: 204 KECSNQEYEIMKDNLLLYN 222


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,112
Number of Sequences: 438
Number of extensions: 4325
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22292145
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)