Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0485
         (703 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces p...    30   0.28 
SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|ch...    28   1.5  
SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyce...    26   6.0  

>SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 467

 Score = 30.3 bits (65), Expect = 0.28
 Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
 Frame = -2

Query: 675 IFLN--ILPVLIIQISKFLCN--SDNSIWDCGTDMTIDWRWVTFELVLVYY 535
           IF N  +L   ++QI+  + N  SD+S   C TD  +DWR  T    LVY+
Sbjct: 266 IFFNYALLHQALVQIATQMKNITSDSSFTFCPTDKDVDWRTHTAFEQLVYH 316


>SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 870

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = -2

Query: 648 IIQISKFLCNSDNSIWDCGTDMTIDWRWVTFELVL 544
           +++  K + +SD S  DC T   ++W  + F +VL
Sbjct: 672 LVKTLKEMHSSDQSCADCNTTARVEWCAINFPVVL 706


>SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 844

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +2

Query: 542 TNTNSKVTHLQSIVISVPQSHILLSELQRNFDI 640
           TNTNSKV ++ S+++S     I L  L    ++
Sbjct: 430 TNTNSKVINVDSLLVSNGADQINLHHLSEYLNV 462


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,817,338
Number of Sequences: 5004
Number of extensions: 57755
Number of successful extensions: 150
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)