BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e40h0485 (703 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_24479| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6 SB_24090| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8 SB_24846| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4 SB_7874| Best HMM Match : PSI (HMM E-Value=8.4) 28 8.4 >SB_24479| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 758 Score = 29.1 bits (62), Expect = 3.6 Identities = 12/37 (32%), Positives = 20/37 (54%) Frame = +1 Query: 502 FIIQNGTPKISIIHQY*FKGYPPPVYRHISSTVPYTI 612 +I++ G K+ ++HQ FK Y P H+ T +I Sbjct: 24 YILKGGVSKLHLLHQSYFKKYGPIYKDHLMGTTTVSI 60 >SB_24090| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 345 Score = 28.7 bits (61), Expect = 4.8 Identities = 13/30 (43%), Positives = 19/30 (63%) Frame = +2 Query: 542 TNTNSKVTHLQSIVISVPQSHILLSELQRN 631 T TN + L SIV S+P+ IL+ ++RN Sbjct: 316 TTTNEDIFFLGSIVESLPEGKILIKFMERN 345 >SB_24846| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 388 Score = 27.9 bits (59), Expect = 8.4 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 3/49 (6%) Frame = +1 Query: 499 DFIIQNGTPKISIIHQY*FKGYPPPVYRHISSTVPYTII---RITKKLR 636 D+I++ G K+ ++ Q FK Y P H+ T I ITK +R Sbjct: 76 DYILKGGFSKLHLLRQSYFKRYGPIYKDHLMGTTTVNISDPEEITKVIR 124 >SB_7874| Best HMM Match : PSI (HMM E-Value=8.4) Length = 275 Score = 27.9 bits (59), Expect = 8.4 Identities = 13/37 (35%), Positives = 24/37 (64%), Gaps = 2/37 (5%) Frame = +2 Query: 146 KEEYKLIHNHIK*KKSHF--IFVNQFSLKHNIITPTF 250 ++++ LI N I + + F I +N+F L H++ TP+F Sbjct: 15 RKQWNLIQNSIAARGNAFCLIHLNRFPLNHDVKTPSF 51 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 18,898,678 Number of Sequences: 59808 Number of extensions: 347270 Number of successful extensions: 725 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 703 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 725 length of database: 16,821,457 effective HSP length: 80 effective length of database: 12,036,817 effective search space used: 1841633001 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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