Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0485
         (703 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g22120.1 68417.m03198 early-responsive to dehydration protein...    28   5.2  
At1g54840.2 68414.m06258 expressed protein                             28   5.2  
At1g54840.1 68414.m06257 expressed protein                             28   5.2  
At3g61750.1 68416.m06925 auxin-responsive protein -related simil...    28   6.9  
At1g11960.1 68414.m01382 early-responsive to dehydration protein...    27   9.1  

>At4g22120.1 68417.m03198 early-responsive to dehydration
           protein-related / ERD protein-related similar to ERD4
           protein (early-responsive to dehydration stress)
           [Arabidopsis thaliana] GI:15375406; contains Pfam
           profile PF02714: Domain of unknown function DUF221
          Length = 771

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +3

Query: 471 LLCLFPFKYRFHNSKWYTKNLNNTP 545
           +L L PF  R + SKWY K L ++P
Sbjct: 27  VLRLQPFNDRVYFSKWYLKGLRSSP 51


>At1g54840.2 68414.m06258 expressed protein
          Length = 268

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +1

Query: 574 VYRHISSTVPYTIIRITKKLRYLNN*NRENIQKDFPSYI 690
           VY HI   V  +++   KKLR   N  R +  +D+P ++
Sbjct: 88  VYYHIIRNVDPSLVMKPKKLREYFNAKRNDSNRDYPLFV 126


>At1g54840.1 68414.m06257 expressed protein
          Length = 349

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +1

Query: 574 VYRHISSTVPYTIIRITKKLRYLNN*NRENIQKDFPSYI 690
           VY HI   V  +++   KKLR   N  R +  +D+P ++
Sbjct: 88  VYYHIIRNVDPSLVMKPKKLREYFNAKRNDSNRDYPLFV 126


>At3g61750.1 68416.m06925 auxin-responsive protein -related similar
           to auxin-induced protein AIR12  GI:11357190 [Arabidopsis
           thaliana];
          Length = 398

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = +1

Query: 568 PPVYRHISSTVPYTIIRITKKLRYLNN*NRENIQKDFPSYIY 693
           PP Y +IS  +P T +  T  LRY    NR+N+     S +Y
Sbjct: 47  PPPYSNISDNMPCTPLWNTFVLRYSE--NRDNVMTIIVSALY 86


>At1g11960.1 68414.m01382 early-responsive to dehydration
           protein-related / ERD protein-related low similarity to
           ERD4 protein [Arabidopsis thaliana] GI:15375406
          Length = 375

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
 Frame = +3

Query: 471 LLCLFPFKYRFHNSKWYTKNLNNTPI----LIQRLPTSSLSSY 587
           +L + PF  R +  KWY K + ++P+    L+ +    +L SY
Sbjct: 27  ILRIQPFNDRVYFPKWYLKGIRSSPLHSGALVSKFVNVNLGSY 69


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,544,529
Number of Sequences: 28952
Number of extensions: 257334
Number of successful extensions: 571
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 571
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1506636208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)