BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e40h0483 (697 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|ch... 151 7e-38 SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr... 113 3e-26 SPAC23A1.18c |mrp51||mitochondrial ribosomal protein subunit L51... 30 0.36 SPAC4F8.02c |mrpl40|SPAC644.02|mitochondrial ribosomal protein s... 26 4.5 SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces pomb... 26 4.5 >SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|chr 1|||Manual Length = 778 Score = 151 bits (367), Expect = 7e-38 Identities = 75/131 (57%), Positives = 91/131 (69%) Frame = +2 Query: 278 YEKLTKNLEVVKKRLGRELTLSEKILYSHLDDPKGQEIERGASYLRLRPDRVAMQDATAQ 457 Y+++ NLE+VKKRL R LT SEKILY HLDDP Q+IERG SYL+LRPDRVA QDATAQ Sbjct: 41 YQRIKDNLEIVKKRLNRPLTYSEKILYGHLDDPVNQDIERGVSYLKLRPDRVACQDATAQ 100 Query: 458 MAMLQFISSGLPRVAVPPPFIVIT*SKPKSEARRIWPGLRTSTKKYTSFLETAGAKYGVG 637 MA+LQF+S+G+P VAVP + + K+ FL+TA AKY +G Sbjct: 101 MAILQFMSAGMPEVAVPVTVHCDHLIEAYEGGPIDLERANVTNKEVYDFLQTACAKYNIG 160 Query: 638 FWKPGSGIIHQ 670 FW+PGSGIIHQ Sbjct: 161 FWRPGSGIIHQ 171 >SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr 2|||Manual Length = 905 Score = 113 bits (271), Expect = 3e-26 Identities = 64/139 (46%), Positives = 85/139 (61%), Gaps = 7/139 (5%) Frame = +2 Query: 275 PYEKLTKNLEVVKKRL-GRELTLSEKILYSHLDDPK------GQEIERGASYLRLRPDRV 433 PYEKL L+ V+K L G++LTL+EK+LYSHL +P+ RG+ YL+L PDRV Sbjct: 37 PYEKLMGKLQQVRKFLPGQKLTLAEKVLYSHLVNPEESFSGVSPSDIRGSLYLKLNPDRV 96 Query: 434 AMQDATAQMAMLQFISSGLPRVAVPPPFIVIT*SKPKSEARRIWPGLRTSTKKYTSFLET 613 AMQDA+AQMA+LQF++ GL + +P A P + K+ FL++ Sbjct: 97 AMQDASAQMALLQFMTCGLEKTMIPASIHCDHLIVGHRGANSDIPDSIANNKEIFDFLQS 156 Query: 614 AGAKYGVGFWKPGSGIIHQ 670 A KYG+ FW PGSGIIHQ Sbjct: 157 AAKKYGIQFWGPGSGIIHQ 175 >SPAC23A1.18c |mrp51||mitochondrial ribosomal protein subunit L51-b |Schizosaccharomyces pombe|chr 1|||Manual Length = 291 Score = 29.9 bits (64), Expect = 0.36 Identities = 16/49 (32%), Positives = 23/49 (46%) Frame = +2 Query: 191 NPTKMFQRISIDRRRGPGGDVQFDKVPLPYEKLTKNLEVVKKRLGRELT 337 +P+K RR G G +Q+ VPL ++T N E + R LT Sbjct: 113 SPSKQSDENDNFRRYGVSGGIQYSNVPLINSRVTPNCESNCSNIRRRLT 161 >SPAC4F8.02c |mrpl40|SPAC644.02|mitochondrial ribosomal protein subunit L40|Schizosaccharomyces pombe|chr 1|||Manual Length = 279 Score = 26.2 bits (55), Expect = 4.5 Identities = 15/32 (46%), Positives = 17/32 (53%) Frame = +2 Query: 221 IDRRRGPGGDVQFDKVPLPYEKLTKNLEVVKK 316 I R RGPG +V K PLP TK E + K Sbjct: 8 IPRLRGPGTNVLKMKKPLPLHMRTKIREHLNK 39 >SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces pombe|chr 1|||Manual Length = 923 Score = 26.2 bits (55), Expect = 4.5 Identities = 9/24 (37%), Positives = 16/24 (66%) Frame = +2 Query: 248 DVQFDKVPLPYEKLTKNLEVVKKR 319 D +FD+V +PY+ + ++E KR Sbjct: 395 DAKFDEVDMPYDTIWLDIEYASKR 418 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,938,710 Number of Sequences: 5004 Number of extensions: 60327 Number of successful extensions: 166 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 155 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 161 length of database: 2,362,478 effective HSP length: 71 effective length of database: 2,007,194 effective search space used: 321151040 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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