Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0483
         (697 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|ch...   151   7e-38
SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr...   113   3e-26
SPAC23A1.18c |mrp51||mitochondrial ribosomal protein subunit L51...    30   0.36 
SPAC4F8.02c |mrpl40|SPAC644.02|mitochondrial ribosomal protein s...    26   4.5  
SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces pomb...    26   4.5  

>SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 778

 Score =  151 bits (367), Expect = 7e-38
 Identities = 75/131 (57%), Positives = 91/131 (69%)
 Frame = +2

Query: 278 YEKLTKNLEVVKKRLGRELTLSEKILYSHLDDPKGQEIERGASYLRLRPDRVAMQDATAQ 457
           Y+++  NLE+VKKRL R LT SEKILY HLDDP  Q+IERG SYL+LRPDRVA QDATAQ
Sbjct: 41  YQRIKDNLEIVKKRLNRPLTYSEKILYGHLDDPVNQDIERGVSYLKLRPDRVACQDATAQ 100

Query: 458 MAMLQFISSGLPRVAVPPPFIVIT*SKPKSEARRIWPGLRTSTKKYTSFLETAGAKYGVG 637
           MA+LQF+S+G+P VAVP         +              + K+   FL+TA AKY +G
Sbjct: 101 MAILQFMSAGMPEVAVPVTVHCDHLIEAYEGGPIDLERANVTNKEVYDFLQTACAKYNIG 160

Query: 638 FWKPGSGIIHQ 670
           FW+PGSGIIHQ
Sbjct: 161 FWRPGSGIIHQ 171


>SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 905

 Score =  113 bits (271), Expect = 3e-26
 Identities = 64/139 (46%), Positives = 85/139 (61%), Gaps = 7/139 (5%)
 Frame = +2

Query: 275 PYEKLTKNLEVVKKRL-GRELTLSEKILYSHLDDPK------GQEIERGASYLRLRPDRV 433
           PYEKL   L+ V+K L G++LTL+EK+LYSHL +P+           RG+ YL+L PDRV
Sbjct: 37  PYEKLMGKLQQVRKFLPGQKLTLAEKVLYSHLVNPEESFSGVSPSDIRGSLYLKLNPDRV 96

Query: 434 AMQDATAQMAMLQFISSGLPRVAVPPPFIVIT*SKPKSEARRIWPGLRTSTKKYTSFLET 613
           AMQDA+AQMA+LQF++ GL +  +P              A    P    + K+   FL++
Sbjct: 97  AMQDASAQMALLQFMTCGLEKTMIPASIHCDHLIVGHRGANSDIPDSIANNKEIFDFLQS 156

Query: 614 AGAKYGVGFWKPGSGIIHQ 670
           A  KYG+ FW PGSGIIHQ
Sbjct: 157 AAKKYGIQFWGPGSGIIHQ 175


>SPAC23A1.18c |mrp51||mitochondrial ribosomal protein subunit L51-b
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 291

 Score = 29.9 bits (64), Expect = 0.36
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = +2

Query: 191 NPTKMFQRISIDRRRGPGGDVQFDKVPLPYEKLTKNLEVVKKRLGRELT 337
           +P+K        RR G  G +Q+  VPL   ++T N E     + R LT
Sbjct: 113 SPSKQSDENDNFRRYGVSGGIQYSNVPLINSRVTPNCESNCSNIRRRLT 161


>SPAC4F8.02c |mrpl40|SPAC644.02|mitochondrial ribosomal protein
           subunit L40|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 279

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 15/32 (46%), Positives = 17/32 (53%)
 Frame = +2

Query: 221 IDRRRGPGGDVQFDKVPLPYEKLTKNLEVVKK 316
           I R RGPG +V   K PLP    TK  E + K
Sbjct: 8   IPRLRGPGTNVLKMKKPLPLHMRTKIREHLNK 39


>SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 923

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +2

Query: 248 DVQFDKVPLPYEKLTKNLEVVKKR 319
           D +FD+V +PY+ +  ++E   KR
Sbjct: 395 DAKFDEVDMPYDTIWLDIEYASKR 418


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,938,710
Number of Sequences: 5004
Number of extensions: 60327
Number of successful extensions: 166
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)