BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e40h0483 (697 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_52142| Best HMM Match : Recombinase (HMM E-Value=8.2) 58 5e-09 SB_10556| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2 SB_39590| Best HMM Match : PHD (HMM E-Value=2.2e-18) 28 6.3 SB_58672| Best HMM Match : PHD (HMM E-Value=3e-18) 28 6.3 >SB_52142| Best HMM Match : Recombinase (HMM E-Value=8.2) Length = 193 Score = 58.4 bits (135), Expect = 5e-09 Identities = 24/32 (75%), Positives = 29/32 (90%) Frame = +1 Query: 508 ATIHCDHLIEAQVGGEKDLARAKDLNKEVYKF 603 +TIHCDHLIEA+ GG +DLA+AKD+NKEVY F Sbjct: 111 STIHCDHLIEAKDGGSQDLAKAKDINKEVYNF 142 Score = 52.4 bits (120), Expect = 3e-07 Identities = 22/28 (78%), Positives = 24/28 (85%) Frame = +2 Query: 587 KKYTSFLETAGAKYGVGFWKPGSGIIHQ 670 K+ +FL TA AKYGVGFWKPGSGIIHQ Sbjct: 137 KEVYNFLATASAKYGVGFWKPGSGIIHQ 164 >SB_10556| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1788 Score = 30.7 bits (66), Expect = 1.2 Identities = 13/36 (36%), Positives = 22/36 (61%) Frame = -3 Query: 470 VTLPFVQWRLAWPHGRDAGGDNLRRVQFPVLWGHPS 363 +TLP +W++A+ G +N R+V + VL+G S Sbjct: 943 LTLPLRRWKIAFRFGAGTSDNNGRKVFYTVLFGQSS 978 >SB_39590| Best HMM Match : PHD (HMM E-Value=2.2e-18) Length = 1284 Score = 28.3 bits (60), Expect = 6.3 Identities = 10/22 (45%), Positives = 14/22 (63%) Frame = -1 Query: 499 YTGKAGRDKL*HCHLCSGVLHG 434 + G AG+DK+ C +CS HG Sbjct: 824 FCGSAGKDKMFFCKVCSEPFHG 845 >SB_58672| Best HMM Match : PHD (HMM E-Value=3e-18) Length = 458 Score = 28.3 bits (60), Expect = 6.3 Identities = 10/22 (45%), Positives = 14/22 (63%) Frame = -1 Query: 499 YTGKAGRDKL*HCHLCSGVLHG 434 + G AG+DK+ C +CS HG Sbjct: 165 FCGSAGKDKMFFCKVCSEPFHG 186 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 22,480,590 Number of Sequences: 59808 Number of extensions: 480441 Number of successful extensions: 1273 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 1183 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1273 length of database: 16,821,457 effective HSP length: 80 effective length of database: 12,036,817 effective search space used: 1817559367 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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