Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0483
         (697 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52142| Best HMM Match : Recombinase (HMM E-Value=8.2)               58   5e-09
SB_10556| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_39590| Best HMM Match : PHD (HMM E-Value=2.2e-18)                   28   6.3  
SB_58672| Best HMM Match : PHD (HMM E-Value=3e-18)                     28   6.3  

>SB_52142| Best HMM Match : Recombinase (HMM E-Value=8.2)
          Length = 193

 Score = 58.4 bits (135), Expect = 5e-09
 Identities = 24/32 (75%), Positives = 29/32 (90%)
 Frame = +1

Query: 508 ATIHCDHLIEAQVGGEKDLARAKDLNKEVYKF 603
           +TIHCDHLIEA+ GG +DLA+AKD+NKEVY F
Sbjct: 111 STIHCDHLIEAKDGGSQDLAKAKDINKEVYNF 142



 Score = 52.4 bits (120), Expect = 3e-07
 Identities = 22/28 (78%), Positives = 24/28 (85%)
 Frame = +2

Query: 587 KKYTSFLETAGAKYGVGFWKPGSGIIHQ 670
           K+  +FL TA AKYGVGFWKPGSGIIHQ
Sbjct: 137 KEVYNFLATASAKYGVGFWKPGSGIIHQ 164


>SB_10556| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1788

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = -3

Query: 470  VTLPFVQWRLAWPHGRDAGGDNLRRVQFPVLWGHPS 363
            +TLP  +W++A+  G     +N R+V + VL+G  S
Sbjct: 943  LTLPLRRWKIAFRFGAGTSDNNGRKVFYTVLFGQSS 978


>SB_39590| Best HMM Match : PHD (HMM E-Value=2.2e-18)
          Length = 1284

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 499 YTGKAGRDKL*HCHLCSGVLHG 434
           + G AG+DK+  C +CS   HG
Sbjct: 824 FCGSAGKDKMFFCKVCSEPFHG 845


>SB_58672| Best HMM Match : PHD (HMM E-Value=3e-18)
          Length = 458

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 499 YTGKAGRDKL*HCHLCSGVLHG 434
           + G AG+DK+  C +CS   HG
Sbjct: 165 FCGSAGKDKMFFCKVCSEPFHG 186


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,480,590
Number of Sequences: 59808
Number of extensions: 480441
Number of successful extensions: 1273
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1273
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)