Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0483
         (697 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g21380.1 68415.m02544 kinesin motor protein-related                 31   0.55 
At2g25730.1 68415.m03084 expressed protein                             29   2.2  
At5g22820.1 68418.m02668 expressed protein                             27   9.0  
At4g33150.2 68417.m04723 lysine-ketoglutarate reductase/saccharo...    27   9.0  
At4g33150.1 68417.m04722 lysine-ketoglutarate reductase/saccharo...    27   9.0  
At3g18060.1 68416.m02297 transducin family protein / WD-40 repea...    27   9.0  

>At2g21380.1 68415.m02544 kinesin motor protein-related
          Length = 1058

 Score = 31.5 bits (68), Expect = 0.55
 Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = -1

Query: 298  ILRQLFVRQGYLVELDIATWAAAAVNGDTLKHLCWIS-ESTTLVLLPWPCKTLIQC 134
            ++ +L  R   + E ++ + AAAA N D   H+C +  ES T  +L  PC+    C
Sbjct: 978  LVARLKARMQEMKEKEMKSQAAAAANADANSHICKVCFESPTATIL-LPCRHFCLC 1032


>At2g25730.1 68415.m03084 expressed protein 
          Length = 2464

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = +3

Query: 402  QVISACVPTVWPCKTPLHKWQCYNLSLPAFP 494
            +VISACVP V+P ++  H W C  + +P  P
Sbjct: 1081 EVISACVPPVYPPRSG-HGWACIPV-IPTTP 1109


>At5g22820.1 68418.m02668 expressed protein
          Length = 490

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -1

Query: 244 TWAAAAVNGDTLKHLCWISEST 179
           +WA    + D L+H+ WI+E+T
Sbjct: 239 SWAHCLESDDILRHILWIAENT 260


>At4g33150.2 68417.m04723 lysine-ketoglutarate
           reductase/saccharopine dehydrogenase bifunctional enzyme
           identical to lysine-ketoglutarate reductase/saccharopine
           dehydrogenase GI:2052508 from [Arabidopsis thaliana]
          Length = 1064

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 117 SPATMAHCMRVLHGQGSRTRV 179
           +P T +HC R+LHG   RT +
Sbjct: 31  TPLTPSHCARLLHGGKDRTGI 51


>At4g33150.1 68417.m04722 lysine-ketoglutarate
           reductase/saccharopine dehydrogenase bifunctional enzyme
           identical to lysine-ketoglutarate reductase/saccharopine
           dehydrogenase GI:2052508 from [Arabidopsis thaliana]
          Length = 1064

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 117 SPATMAHCMRVLHGQGSRTRV 179
           +P T +HC R+LHG   RT +
Sbjct: 31  TPLTPSHCARLLHGGKDRTGI 51


>At3g18060.1 68416.m02297 transducin family protein / WD-40 repeat
           family protein similar to 66 kDa stress protein
           (SP:P90587) [Physarum polycephalum (Slime mold)];
           similar to WDR1 protein GB:AAD05042 [Gallus gallus]
           (Genomics 56 (1), 59-69 (1999)); contains 11 WD-40
           repeats (PF00400)
          Length = 609

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 14/52 (26%), Positives = 25/52 (48%)
 Frame = +1

Query: 523 DHLIEAQVGGEKDLARAKDLNKEVYKFFRDCRS*IWSRFLEARLWYYPSGSF 678
           DH++   +GG   +  A DL+K  ++F    ++      L+    Y  SGS+
Sbjct: 294 DHIVTVSLGGTISIFSASDLDKSPFQFSGHMKNVSSLAVLKGNADYILSGSY 345


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,844,832
Number of Sequences: 28952
Number of extensions: 344457
Number of successful extensions: 882
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 848
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 882
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)