Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0481
         (785 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|c...    88   2e-18
SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo...    26   5.3  
SPAC13G7.12c |||choline kinase |Schizosaccharomyces pombe|chr 1|...    25   9.3  
SPBC1711.04 |||methylenetetrahydrofolate reductase |Schizosaccha...    25   9.3  
SPBC83.09c |||GYF domain|Schizosaccharomyces pombe|chr 2|||Manual      25   9.3  
SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces pom...    25   9.3  

>SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 479

 Score = 87.8 bits (208), Expect = 2e-18
 Identities = 42/96 (43%), Positives = 57/96 (59%)
 Frame = +3

Query: 243 CDSVFILHVGGVYGGYLFLFKAMWRTSIFAIFLYLCSGLGITAGAHRLWAHKSYKARLPL 422
           C  +F L +  +YG  +F      +T IFAI  Y  SGLGITAG HRLW+H++YKA+ PL
Sbjct: 67  CMLIFGLPMIAIYG--VFTTPLQTKTLIFAIIYYAYSGLGITAGYHRLWSHRAYKAKKPL 124

Query: 423 RILLTIFNTIAFQDAVVDWARDHRMHHKYQRPMRTP 530
              L      AF+ ++  W+RDHR HH+Y    + P
Sbjct: 125 EYFLAAGGAAAFEGSIRWWSRDHRAHHRYTDTDKDP 160



 Score = 63.7 bits (148), Expect = 3e-11
 Identities = 26/84 (30%), Positives = 50/84 (59%), Gaps = 1/84 (1%)
 Frame = +2

Query: 509 SETDADPHNATRGFFFSHIGWLLLRKHPEIKAKGHTVDVNDLRNDPILRFQKKYYQILMP 688
           ++TD DP+N  +GF+++H+GW+++ ++P    +    DV+DL +DP + F  +++  +  
Sbjct: 154 TDTDKDPYNVKKGFWYAHVGWMIILQNPRRIGRS---DVSDLNSDPFVMFNHRHFLPIAS 210

Query: 689 LACFIMPT-YVPTLWGETVWNSFY 757
              FI P+ +   LWG+     FY
Sbjct: 211 FMAFIFPSLFCGLLWGDYRGGYFY 234


>SPBC16A3.13 |meu7|aah4|alpha-amylase homolog
           Aah4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 774

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
 Frame = +3

Query: 477 WARDHRMHH-KYQRPMRTPTTQPEDSSFPTLAGCC*GSIPKSKP 605
           W  +   HH K+ RP+    T+P+   +     C  G  P+  P
Sbjct: 364 WKHEEHCHHGKFLRPVPHNVTKPDHKPWKHEEHCHHGKFPRPVP 407



 Score = 25.4 bits (53), Expect = 9.3
 Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
 Frame = +3

Query: 477 WARDHRMHH-KYQRPMRTPTTQPEDSSFPTLAGCC*GSIPKSKP 605
           W  +   HH K+ RP+    T+P+   +     C  G  P+  P
Sbjct: 281 WKHEEHCHHGKFPRPIPHNGTKPDHKPWKHEEHCHHGRFPRPVP 324


>SPAC13G7.12c |||choline kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 456

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +1

Query: 673 PNFNAFSLFHHAYICTNIVGRNSLEL 750
           P+FNA  L +HAY+  + V  + LE+
Sbjct: 312 PDFNARKLVYHAYVEQSAVINDLLEI 337


>SPBC1711.04 |||methylenetetrahydrofolate reductase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 320

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = +1

Query: 655 FSEEVLPNFNAFSLFHHAYICTNIVGRNSLELLLR 759
           FS E   NF+A SL  HA I    +G+ ++ +LLR
Sbjct: 272 FSSE--KNFDAASLKEHAGIYVPSIGKVTIAMLLR 304


>SPBC83.09c |||GYF domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 408

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 17/56 (30%), Positives = 26/56 (46%)
 Frame = +2

Query: 500 PQISETDADPHNATRGFFFSHIGWLLLRKHPEIKAKGHTVDVNDLRNDPILRFQKK 667
           P  S T  D H+    +  S++G    RK P  K +G+    ++   D IL  +KK
Sbjct: 8   PGNSSTVGDVHDVFFEYDVSNVG----RKRPRTKEEGYYESESEEDEDQILNKEKK 59


>SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 447

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = +1

Query: 121 QRKQEASWVLYEADANNLPEDAPPHVPPSAEKRPWKI-VWRN 243
           QR+ E+++ L E D     E +    PP + K P  +  W N
Sbjct: 11  QRRDESAYRLGEEDGRQKGESSRKKRPPLSRKNPSNVSFWSN 52


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,762,843
Number of Sequences: 5004
Number of extensions: 89380
Number of successful extensions: 258
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 244
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 258
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)