Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0479
         (818 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0268 - 2029007-2029464,2029521-2029615,2030815-2031077,203...    30   1.9  
06_03_0636 + 22983898-22985043                                         29   3.4  
08_01_0509 + 4433837-4434437,4434564-4434636,4435408-4437367,443...    29   5.9  

>11_01_0268 -
           2029007-2029464,2029521-2029615,2030815-2031077,
           2031154-2031279,2031404-2032996
          Length = 844

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 19/68 (27%), Positives = 29/68 (42%)
 Frame = +3

Query: 249 EKNDCQEILNFSSTCKHFNELVNTDQQLWKEKLKELIPDAAFVVVESDCHDGDWLEEIKG 428
           E+     +LNF  +C    ELV     LW+E       D  +   E D H  DW   +K 
Sbjct: 550 ERKGRHALLNFFRSCTELKELV-----LWRE-------DKVYFEEECDVHSDDWSSALKD 597

Query: 429 FYYIKNYV 452
              +K+++
Sbjct: 598 IACLKSHL 605


>06_03_0636 + 22983898-22985043
          Length = 381

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +3

Query: 354 LIPDAAFVVVESDCHDGD 407
           +IPD   VV+ SDCH GD
Sbjct: 327 VIPDGRVVVIGSDCHGGD 344


>08_01_0509 + 4433837-4434437,4434564-4434636,4435408-4437367,
            4437721-4437990,4438168-4438605,4438772-4439043,
            4439126-4439274,4439339-4439470,4439554-4439880,
            4439963-4440357,4440551-4440861,4441304-4441394,
            4441806-4441847
          Length = 1686

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = +3

Query: 264  QEILNFSSTCKHFNELVNT-DQQLWKEKLKELIPDAAFVVVESDCHDGDWLEEIKGF 431
            QE+ + +    + N LV+  D +L+K +L+    D + VVV  DC   DW    + F
Sbjct: 904  QELQDATDFFSNNNVLVDLFDSKLYKGRLQ----DGSLVVVHMDCPTADWSRRTRQF 956


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,139,568
Number of Sequences: 37544
Number of extensions: 347130
Number of successful extensions: 706
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 691
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 706
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2244686244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)