Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0479
         (818 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44753| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  
SB_10275| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.6  
SB_40301| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.0  
SB_35209| Best HMM Match : Ank (HMM E-Value=0)                         29   6.0  
SB_8286| Best HMM Match : AT_hook (HMM E-Value=0.98)                   29   6.0  

>SB_44753| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1379

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 18/64 (28%), Positives = 28/64 (43%)
 Frame = +3

Query: 210 NIFLTSRSNFYNTEKNDCQEILNFSSTCKHFNELVNTDQQLWKEKLKELIPDAAFVVVES 389
           N+F  + S F    + DC+ I      C+H+N+    D    K KL   + D   +   +
Sbjct: 759 NVFKQNNSQFIAFRRRDCESINEL--CCQHYNKHPTKDH---KGKLDFQVGDKICIGKNT 813

Query: 390 DCHD 401
           DC D
Sbjct: 814 DCFD 817


>SB_10275| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 947

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +3

Query: 270 ILNFSSTCKHFNELVNTDQQLWKEKLKE 353
           +LN S TC+ F EL      LWK+  K+
Sbjct: 36  LLNLSETCRRFKELCFECDTLWKDLCKQ 63


>SB_40301| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2653

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 10/35 (28%), Positives = 24/35 (68%)
 Frame = +2

Query: 506  NKQDVRDFFNVAISTKMSLAYAINILQDFIKITSE 610
            N+ +V + F + +S+  + A+ + +LQ+ +K+T+E
Sbjct: 2235 NEAEVHEDFRLFLSSMPTKAFPVTVLQNSVKVTNE 2269


>SB_35209| Best HMM Match : Ank (HMM E-Value=0)
          Length = 787

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 18/61 (29%), Positives = 31/61 (50%)
 Frame = +1

Query: 64  LFTYIRCLKCKFCSVLYNLLAVTSGWSSKSITTTS*DLRKIHIMDEELSIYSLPAEVISI 243
           L  Y+R  +  FC ++YN    T+  SS  I      ++ +HI+   L+ + L  EV+ I
Sbjct: 728 LTVYLRSNEQDFCGIVYN---TTNLCSSSLIVRQDGFVKLLHIVCIVLACFHLSKEVLQI 784

Query: 244 I 246
           +
Sbjct: 785 V 785


>SB_8286| Best HMM Match : AT_hook (HMM E-Value=0.98)
          Length = 506

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +3

Query: 201 RTFNIFLTSRSNFYNTEKNDCQEILNFSSTCK 296
           R F+I  + R   +N+E+  C ++ N  S CK
Sbjct: 19  RLFSIMTSKRHRVFNSEEQICSKLQNVLSLCK 50


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,388,505
Number of Sequences: 59808
Number of extensions: 444241
Number of successful extensions: 1183
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1070
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1178
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2287608719
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)