Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0479
         (818 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    22   1.1  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    22   1.1  
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    22   1.1  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    23   4.5  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   5.9  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   5.9  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    22   7.8  

>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.8 bits (44), Expect(2) = 1.1
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -3

Query: 57  NSLSNNYNKMYC 22
           N  +NNY K+YC
Sbjct: 90  NYNNNNYKKLYC 101



 Score = 21.0 bits (42), Expect(2) = 1.1
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -3

Query: 66  KFANSLSNNYN 34
           K  +SLSNNYN
Sbjct: 80  KIISSLSNNYN 90


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.8 bits (44), Expect(2) = 1.1
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -3

Query: 57  NSLSNNYNKMYC 22
           N  +NNY K+YC
Sbjct: 90  NYNNNNYKKLYC 101



 Score = 21.0 bits (42), Expect(2) = 1.1
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -3

Query: 66  KFANSLSNNYN 34
           K  +SLSNNYN
Sbjct: 80  KIISSLSNNYN 90


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.8 bits (44), Expect(2) = 1.1
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -3

Query: 57  NSLSNNYNKMYC 22
           N  +NNY K+YC
Sbjct: 90  NYNNNNYKKLYC 101



 Score = 21.0 bits (42), Expect(2) = 1.1
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -3

Query: 66  KFANSLSNNYN 34
           K  +SLSNNYN
Sbjct: 80  KIISSLSNNYN 90


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +2

Query: 596 KITSELADAYACKKPFTLT 652
           K+  ELA  Y CK+  T+T
Sbjct: 163 KVLGELAILYNCKRTATIT 181


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +3

Query: 33   CCNCYSKNLQTFYLHKM 83
            C  CYS N + F LH +
Sbjct: 1068 CYVCYSPNDEDFVLHSL 1084


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -1

Query: 176 KS*LVVVIDLDDHPLVTASKLYNTLQNLHFKH 81
           KS L  V+DL+D+ L + + L N + +    H
Sbjct: 384 KSLLANVLDLEDNALASHNNLLNNVYSTPGPH 415


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -3

Query: 69  KKFANSLSNNYN 34
           +K  +SLSNNYN
Sbjct: 312 RKIISSLSNNYN 323


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 221,882
Number of Sequences: 438
Number of extensions: 4653
Number of successful extensions: 52
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26096055
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)