Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0478
         (749 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q1HQ58 Cluster: F-box only protein 21; n=1; Bombyx mori...   190   2e-47
UniRef50_UPI00015B5324 Cluster: PREDICTED: similar to KIAA0875 p...    37   0.61 
UniRef50_Q7RR96 Cluster: Putative uncharacterized protein PY0083...    35   1.9  
UniRef50_Q54K75 Cluster: Putative uncharacterized protein; n=1; ...    35   2.5  
UniRef50_A6LLH6 Cluster: Surface antigen variable number repeat ...    34   4.3  
UniRef50_Q65110 Cluster: L protein; n=1; Adelaide River virus|Re...    33   7.5  
UniRef50_Q54DE4 Cluster: Putative uncharacterized protein; n=1; ...    33   7.5  

>UniRef50_Q1HQ58 Cluster: F-box only protein 21; n=1; Bombyx
           mori|Rep: F-box only protein 21 - Bombyx mori (Silk
           moth)
          Length = 606

 Score =  190 bits (464), Expect = 2e-47
 Identities = 84/85 (98%), Positives = 85/85 (100%)
 Frame = +1

Query: 256 CQEILNFSSTCKHFNELVNTDQQLWKEKLKELIPDAAFVVVESDCHDGDWLEEIKGFYYI 435
           CQEILNFSSTCKHFNELVNTDQQLWKEKLKELIPDAAFVVVESDCHDGDWLEEIKGFYYI
Sbjct: 24  CQEILNFSSTCKHFNELVNTDQQLWKEKLKELIPDAAFVVVESDCHDGDWLEEIKGFYYI 83

Query: 436 KNYVFSELKTMSPTHYCKRDDLTKR 510
           KNYVFSELKTMSPTHYCKRDDLTK+
Sbjct: 84  KNYVFSELKTMSPTHYCKRDDLTKQ 108



 Score =  172 bits (418), Expect = 9e-42
 Identities = 81/82 (98%), Positives = 81/82 (98%)
 Frame = +3

Query: 504 KADVRDFFNVAISTKMSLAYAINILQDFIKITSELADAYACKKPFTLTEMHYARILLRHL 683
           K DVRDFFNVAISTKMSLAYAINILQDFIKITSELADAYACKKPFTLTEMHYARILLRHL
Sbjct: 107 KQDVRDFFNVAISTKMSLAYAINILQDFIKITSELADAYACKKPFTLTEMHYARILLRHL 166

Query: 684 IHPFITSKWVQLEKKDQLDPEF 749
           IHPFITSKWVQLEKKDQLDPEF
Sbjct: 167 IHPFITSKWVQLEKKDQLDPEF 188



 Score = 46.4 bits (105), Expect = 8e-04
 Identities = 22/22 (100%), Positives = 22/22 (100%)
 Frame = +2

Query: 188 MDEELSIYSLPAEVISIILKNN 253
           MDEELSIYSLPAEVISIILKNN
Sbjct: 1   MDEELSIYSLPAEVISIILKNN 22


>UniRef50_UPI00015B5324 Cluster: PREDICTED: similar to KIAA0875
           protein; n=1; Nasonia vitripennis|Rep: PREDICTED:
           similar to KIAA0875 protein - Nasonia vitripennis
          Length = 617

 Score = 36.7 bits (81), Expect = 0.61
 Identities = 19/80 (23%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
 Frame = +1

Query: 262 EILNFSSTCKHFNELVNTDQQLWKEKLKELIPDAAFVVVESD-CHD-GDWLEEIKGFYYI 435
           ++L+ + +CKH + +V    +LW+ K  +  P    + +E    H   +W++E +     
Sbjct: 28  DVLSVAFSCKHLHRVVLASGKLWRAKFFQRWPSLKEIYLEQQRLHQVQNWVQEAQANIGS 87

Query: 436 KNYVFSELKTMSPTHYCKRD 495
           +  V ++L  MS  +Y K++
Sbjct: 88  RRAVMNQLGLMSAKYYKKQE 107


>UniRef50_Q7RR96 Cluster: Putative uncharacterized protein PY00836;
           n=3; Plasmodium (Vinckeia)|Rep: Putative uncharacterized
           protein PY00836 - Plasmodium yoelii yoelii
          Length = 882

 Score = 35.1 bits (77), Expect = 1.9
 Identities = 27/78 (34%), Positives = 36/78 (46%), Gaps = 6/78 (7%)
 Frame = +1

Query: 139 IQINNYN*LRFTKNTYNG*RTFNIFLTSRSNFYNTEK*CCQEILNFSSTCKHFNELVNTD 318
           I  NN N    T+N     +  +  +T  S  +N EK    EIL F      FN L NTD
Sbjct: 700 INTNNLNNFNITENVNRLLKYVDNAMTDYSQLFNEEK--SIEILRFQQLDNTFNILTNTD 757

Query: 319 QQ------LWKEKLKELI 354
            +      L K++LKE+I
Sbjct: 758 DEYSFLMNLLKDELKEMI 775


>UniRef50_Q54K75 Cluster: Putative uncharacterized protein; n=1;
           Dictyostelium discoideum AX4|Rep: Putative
           uncharacterized protein - Dictyostelium discoideum AX4
          Length = 669

 Score = 34.7 bits (76), Expect = 2.5
 Identities = 21/81 (25%), Positives = 34/81 (41%)
 Frame = +1

Query: 148 NNYN*LRFTKNTYNG*RTFNIFLTSRSNFYNTEK*CCQEILNFSSTCKHFNELVNTDQQL 327
           NN N      N  N        +++  N YN +K     ++NFS TCK+F  L   D   
Sbjct: 115 NNNNNSNNNNNNNNNINNEEESISANYNSYN-KKTILNVVINFSMTCKYFYYLFQ-DDGF 172

Query: 328 WKEKLKELIPDAAFVVVESDC 390
           W    K    + + + ++ +C
Sbjct: 173 WYRTYKSFFSNYSLIDIDKNC 193


>UniRef50_A6LLH6 Cluster: Surface antigen variable number repeat
           protein precursor; n=1; Thermosipho melanesiensis
           BI429|Rep: Surface antigen variable number repeat
           protein precursor - Thermosipho melanesiensis BI429
          Length = 727

 Score = 33.9 bits (74), Expect = 4.3
 Identities = 21/69 (30%), Positives = 34/69 (49%)
 Frame = +1

Query: 316 DQQLWKEKLKELIPDAAFVVVESDCHDGDWLEEIKGFYYIKNYVFSELKTMSPTHYCKRD 495
           D++ +   +K  I D  F++  ++   GD   EI+G    K Y F +L ++ P  Y  RD
Sbjct: 324 DEKNYIVSVKPEIRDEEFLIHVTEYKFGD--VEIEGLEQTKPYTFDDLISIKPGGYANRD 381

Query: 496 DLTKRMSEI 522
           +L     EI
Sbjct: 382 ELRNTYVEI 390


>UniRef50_Q65110 Cluster: L protein; n=1; Adelaide River virus|Rep:
           L protein - Adelaide River virus (ARV)
          Length = 384

 Score = 33.1 bits (72), Expect = 7.5
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +1

Query: 262 EILNFSSTCKHFNELVNTDQQLWKEKLKELIPD 360
           EI +F+  C  F++L+N DQ  W++   + I D
Sbjct: 6   EIYDFNEECNFFDQLINHDQDEWEDSAVDYIED 38


>UniRef50_Q54DE4 Cluster: Putative uncharacterized protein; n=1;
           Dictyostelium discoideum AX4|Rep: Putative
           uncharacterized protein - Dictyostelium discoideum AX4
          Length = 530

 Score = 33.1 bits (72), Expect = 7.5
 Identities = 16/32 (50%), Positives = 21/32 (65%)
 Frame = +1

Query: 259 QEILNFSSTCKHFNELVNTDQQLWKEKLKELI 354
           +EIL FS  CK FN+ +N  + LWK KL + I
Sbjct: 130 KEILKFSLVCKEFNKAIN-HKFLWKIKLFQFI 160


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 678,418,856
Number of Sequences: 1657284
Number of extensions: 12596123
Number of successful extensions: 29585
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 28535
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29578
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 61734884250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)