Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0478
         (749 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su...    30   0.40 
SPAC12B10.04 |||tubulin-tyrosine ligase |Schizosaccharomyces pom...    28   1.6  
SPAC823.11 |||sphingosine-1-phosphate phosphatase |Schizosacchar...    28   1.6  
SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyce...    27   2.9  
SPAC1250.02 |mug95||sequence orphan|Schizosaccharomyces pombe|ch...    26   6.6  

>SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex
           subunit Mtr4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1117

 Score = 29.9 bits (64), Expect = 0.40
 Identities = 17/38 (44%), Positives = 21/38 (55%)
 Frame = -1

Query: 356 GISSFNFSFHNCWSVFTNSLKCLQVELKLSISWQHYFS 243
           GIS   F    C+  F NSL+  ++E KL  S QHY S
Sbjct: 646 GISP-EFMLERCFFQFQNSLEVPKLEAKLEESQQHYDS 682


>SPAC12B10.04 |||tubulin-tyrosine ligase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 403

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 14/42 (33%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
 Frame = +3

Query: 462 NNVTNTLLQTG*FNKADVRDFFNVAISTKMSLAYAI-NILQD 584
           ++++NT LQ     ++ +RDF+N +I  K  +  +I NI+ D
Sbjct: 265 SHLSNTCLQGDNVEQSSIRDFWNTSIENKDDIFKSILNIIGD 306


>SPAC823.11 |||sphingosine-1-phosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 411

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = -1

Query: 332 FHNCWSVFTNSLKCLQVELKLSISWQH 252
           FHN WS  + S+  L V L L   W H
Sbjct: 224 FHNVWSSSSTSVPILSVVLALFFIWFH 250


>SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 442

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = +2

Query: 38  VTQRICKLFTYIRCLKCKFCSVLYNLLAVTSGW 136
           V+ RI ++F  +  +KC  CSV+++  +  S +
Sbjct: 240 VSNRIVRIFFLLSAMKCLGCSVIWHTFSSLSNY 272


>SPAC1250.02 |mug95||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 178

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -1

Query: 641 SKWFFACICICQFTSYFYK 585
           +KWFF C+C      +F K
Sbjct: 14  TKWFFCCVCTILTMPFFKK 32


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,024,088
Number of Sequences: 5004
Number of extensions: 59881
Number of successful extensions: 147
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)