BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e40h0478 (749 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 11_01_0268 - 2029007-2029464,2029521-2029615,2030815-2031077,203... 29 3.0 06_03_0636 + 22983898-22985043 29 3.0 08_01_0509 + 4433837-4434437,4434564-4434636,4435408-4437367,443... 29 5.2 03_02_0871 - 11978725-11978986,11979265-11979422,11979501-119797... 29 5.2 08_01_0272 + 2200061-2200078,2200835-2202076,2202201-2202698,220... 28 6.9 01_06_1788 - 39873900-39873986,39874009-39874137,39874180-398742... 28 6.9 >11_01_0268 - 2029007-2029464,2029521-2029615,2030815-2031077, 2031154-2031279,2031404-2032996 Length = 844 Score = 29.5 bits (63), Expect = 3.0 Identities = 18/61 (29%), Positives = 27/61 (44%) Frame = +1 Query: 265 ILNFSSTCKHFNELVNTDQQLWKEKLKELIPDAAFVVVESDCHDGDWLEEIKGFYYIKNY 444 +LNF +C ELV LW+E D + E D H DW +K +K++ Sbjct: 557 LLNFFRSCTELKELV-----LWRE-------DKVYFEEECDVHSDDWSSALKDIACLKSH 604 Query: 445 V 447 + Sbjct: 605 L 605 >06_03_0636 + 22983898-22985043 Length = 381 Score = 29.5 bits (63), Expect = 3.0 Identities = 11/18 (61%), Positives = 13/18 (72%) Frame = +1 Query: 349 LIPDAAFVVVESDCHDGD 402 +IPD VV+ SDCH GD Sbjct: 327 VIPDGRVVVIGSDCHGGD 344 >08_01_0509 + 4433837-4434437,4434564-4434636,4435408-4437367, 4437721-4437990,4438168-4438605,4438772-4439043, 4439126-4439274,4439339-4439470,4439554-4439880, 4439963-4440357,4440551-4440861,4441304-4441394, 4441806-4441847 Length = 1686 Score = 28.7 bits (61), Expect = 5.2 Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 1/57 (1%) Frame = +1 Query: 259 QEILNFSSTCKHFNELVNT-DQQLWKEKLKELIPDAAFVVVESDCHDGDWLEEIKGF 426 QE+ + + + N LV+ D +L+K +L+ D + VVV DC DW + F Sbjct: 904 QELQDATDFFSNNNVLVDLFDSKLYKGRLQ----DGSLVVVHMDCPTADWSRRTRQF 956 >03_02_0871 - 11978725-11978986,11979265-11979422,11979501-11979705, 11979797-11980086,11980539-11980692,11980793-11980881, 11981567-11981634,11982082-11982352 Length = 498 Score = 28.7 bits (61), Expect = 5.2 Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 2/57 (3%) Frame = +3 Query: 567 INILQDFIKITSELADAYACKKPFTLTEMHYA--RILLRHLIHPFITSKWVQLEKKD 731 IN LQD +KI EL ++ K PF++ + ++ + LR ++ K V+ + D Sbjct: 155 INSLQDEVKIIRELPQKFSRKVPFSMQPISWSSEKYYLRQILPLVRKHKVVRFSRTD 211 >08_01_0272 + 2200061-2200078,2200835-2202076,2202201-2202698, 2203316-2203345 Length = 595 Score = 28.3 bits (60), Expect = 6.9 Identities = 17/56 (30%), Positives = 25/56 (44%) Frame = +3 Query: 549 MSLAYAINILQDFIKITSELADAYACKKPFTLTEMHYARILLRHLIHPFITSKWVQ 716 +S A+ + IL FI ++S A A F T H + L+HP +W Q Sbjct: 308 LSGAFILEILSVFIVVSSFWAYFMATVSDFLCTRCHDVIFSIVKLVHPESKPQWSQ 363 >01_06_1788 - 39873900-39873986,39874009-39874137,39874180-39874246, 39874874-39874909,39875146-39875292,39875772-39875899, 39876349-39876435,39876523-39876633,39877433-39877600, 39877665-39877749,39877826-39877942,39878051-39878127, 39879981-39880077,39880175-39880377,39880519-39880645, 39880687-39880754,39880855-39880908,39880990-39881108, 39881651-39881729,39881803-39881865,39882113-39882232, 39882718-39882774,39882872-39882988,39883122-39883172, 39883262-39883360,39883438-39883583,39883740-39883887 Length = 928 Score = 28.3 bits (60), Expect = 6.9 Identities = 18/55 (32%), Positives = 26/55 (47%) Frame = +3 Query: 462 NNVTNTLLQTG*FNKADVRDFFNVAISTKMSLAYAINILQDFIKITSELADAYAC 626 NN+ L+Q G FNKA + ++ AI + A L + K+T DA C Sbjct: 226 NNIAGLLMQWGDFNKAAL--YYKEAIKCNPAFYDAHLNLGNLYKVTGMRQDAIVC 278 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 17,385,037 Number of Sequences: 37544 Number of extensions: 312679 Number of successful extensions: 593 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 583 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 593 length of database: 14,793,348 effective HSP length: 80 effective length of database: 11,789,828 effective search space used: 1992480932 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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