Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0478
         (749 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40301| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.3  
SB_10275| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.3  
SB_35209| Best HMM Match : Ank (HMM E-Value=0)                         29   5.3  
SB_8286| Best HMM Match : AT_hook (HMM E-Value=0.98)                   28   9.3  

>SB_40301| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2653

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 11/35 (31%), Positives = 25/35 (71%)
 Frame = +3

Query: 501  NKADVRDFFNVAISTKMSLAYAINILQDFIKITSE 605
            N+A+V + F + +S+  + A+ + +LQ+ +K+T+E
Sbjct: 2235 NEAEVHEDFRLFLSSMPTKAFPVTVLQNSVKVTNE 2269


>SB_10275| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 947

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +1

Query: 265 ILNFSSTCKHFNELVNTDQQLWKEKLKE 348
           +LN S TC+ F EL      LWK+  K+
Sbjct: 36  LLNLSETCRRFKELCFECDTLWKDLCKQ 63


>SB_35209| Best HMM Match : Ank (HMM E-Value=0)
          Length = 787

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 18/61 (29%), Positives = 31/61 (50%)
 Frame = +2

Query: 59  LFTYIRCLKCKFCSVLYNLLAVTSGWSSKSITTTS*DLRKIHIMDEELSIYSLPAEVISI 238
           L  Y+R  +  FC ++YN    T+  SS  I      ++ +HI+   L+ + L  EV+ I
Sbjct: 728 LTVYLRSNEQDFCGIVYN---TTNLCSSSLIVRQDGFVKLLHIVCIVLACFHLSKEVLQI 784

Query: 239 I 241
           +
Sbjct: 785 V 785


>SB_8286| Best HMM Match : AT_hook (HMM E-Value=0.98)
          Length = 506

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +1

Query: 196 RTFNIFLTSRSNFYNTEK*CCQEILNFSSTCK 291
           R F+I  + R   +N+E+  C ++ N  S CK
Sbjct: 19  RLFSIMTSKRHRVFNSEEQICSKLQNVLSLCK 50


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,337,034
Number of Sequences: 59808
Number of extensions: 399574
Number of successful extensions: 879
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 809
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 879
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)