Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0477
         (765 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC8D2.03c |hhf2|ams3, h4.2|histone H4 h4.2|Schizosaccharomyces...    84   2e-17
SPBC1105.12 |hhf3|h4.3|histone H4 h4.3|Schizosaccharomyces pombe...    84   2e-17
SPAC1834.03c |hhf1|h4.1|histone H4 h4.1|Schizosaccharomyces pomb...    84   2e-17
SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr 2...    33   0.059
SPAC17G8.10c |dma1||mitotic spindle checkpoint protein Dma1|Schi...    28   1.7  
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote...    27   2.9  
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki...    25   9.0  

>SPBC8D2.03c |hhf2|ams3, h4.2|histone H4 h4.2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 103

 Score = 83.8 bits (198), Expect = 2e-17
 Identities = 37/41 (90%), Positives = 41/41 (100%)
 Frame = +1

Query: 256 LENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 378
           LENVIRDAVTYTEHAKRKTVT++DVVY+LKRQGRT+YGFGG
Sbjct: 63  LENVIRDAVTYTEHAKRKTVTSLDVVYSLKRQGRTIYGFGG 103



 Score = 75.8 bits (178), Expect = 6e-15
 Identities = 35/40 (87%), Positives = 38/40 (95%)
 Frame = +2

Query: 134 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKV 253
           +LRDNIQGITKPAIRRLARRGGVKRIS L+YEETR VLK+
Sbjct: 22  ILRDNIQGITKPAIRRLARRGGVKRISALVYEETRAVLKL 61


>SPBC1105.12 |hhf3|h4.3|histone H4 h4.3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 103

 Score = 83.8 bits (198), Expect = 2e-17
 Identities = 37/41 (90%), Positives = 41/41 (100%)
 Frame = +1

Query: 256 LENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 378
           LENVIRDAVTYTEHAKRKTVT++DVVY+LKRQGRT+YGFGG
Sbjct: 63  LENVIRDAVTYTEHAKRKTVTSLDVVYSLKRQGRTIYGFGG 103



 Score = 75.8 bits (178), Expect = 6e-15
 Identities = 35/40 (87%), Positives = 38/40 (95%)
 Frame = +2

Query: 134 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKV 253
           +LRDNIQGITKPAIRRLARRGGVKRIS L+YEETR VLK+
Sbjct: 22  ILRDNIQGITKPAIRRLARRGGVKRISALVYEETRAVLKL 61


>SPAC1834.03c |hhf1|h4.1|histone H4 h4.1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 103

 Score = 83.8 bits (198), Expect = 2e-17
 Identities = 37/41 (90%), Positives = 41/41 (100%)
 Frame = +1

Query: 256 LENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 378
           LENVIRDAVTYTEHAKRKTVT++DVVY+LKRQGRT+YGFGG
Sbjct: 63  LENVIRDAVTYTEHAKRKTVTSLDVVYSLKRQGRTIYGFGG 103



 Score = 75.8 bits (178), Expect = 6e-15
 Identities = 35/40 (87%), Positives = 38/40 (95%)
 Frame = +2

Query: 134 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKV 253
           +LRDNIQGITKPAIRRLARRGGVKRIS L+YEETR VLK+
Sbjct: 22  ILRDNIQGITKPAIRRLARRGGVKRISALVYEETRAVLKL 61


>SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 479

 Score = 32.7 bits (71), Expect = 0.059
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +1

Query: 244 SQSVLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQ 351
           S+   + +  D   + +HA RKT+   DVV  +KRQ
Sbjct: 415 SELFFKQIANDLSAFADHAHRKTIDTQDVVLLMKRQ 450


>SPAC17G8.10c |dma1||mitotic spindle checkpoint protein
           Dma1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 267

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = -2

Query: 575 YNINDSKKFLKHVSRWST-SCVASCLLAVTAVVSCQSLLGCPCN 447
           YN+N+ K+  + V   S+ S    C + +  V+ CQ+L   PC+
Sbjct: 168 YNLNEFKRMQELVLCGSSESGPPECCICLMPVLPCQALFVAPCS 211


>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 592

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 11/46 (23%), Positives = 21/46 (45%)
 Frame = +2

Query: 380 KEVSSTIFYFYFLSRERFNFFFSYTDNRAMTDNXXXXXXXASKKQH 517
           KE++ T++Y+YF   +  N+      ++A             KKQ+
Sbjct: 53  KEIADTVWYYYFDVEKSVNYLLQKASSKAGAKEKQNTDSQKEKKQN 98


>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase
           kinase Win1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1436

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 15  ALKSAATTNTKHKPRSSSR*PVAVKEA 95
           A+  + T+N  H P SSS  P+ +K A
Sbjct: 123 AVSPSDTSNLLHPPTSSSSIPIPIKNA 149


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,692,999
Number of Sequences: 5004
Number of extensions: 51570
Number of successful extensions: 153
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)