Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0477
         (765 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X91509-1|CAA62809.1|  103|Apis mellifera histone H4 protein.           83   2e-18
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    24   1.3  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    24   1.3  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    24   1.3  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   3.1  
DQ435329-1|ABD92644.1|  150|Apis mellifera OBP12 protein.              23   4.1  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    23   4.1  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   9.5  

>X91509-1|CAA62809.1|  103|Apis mellifera histone H4 protein.
          Length = 103

 Score = 83.4 bits (197), Expect = 2e-18
 Identities = 39/41 (95%), Positives = 39/41 (95%)
 Frame = +1

Query: 256 LENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 378
           LENVIRDAVTYTEH KRKTVTAMDVVYALK QGRTLYGFGG
Sbjct: 63  LENVIRDAVTYTEHTKRKTVTAMDVVYALKIQGRTLYGFGG 103



 Score = 79.8 bits (188), Expect = 3e-17
 Identities = 39/40 (97%), Positives = 39/40 (97%)
 Frame = +2

Query: 134 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKV 253
           VL DNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKV
Sbjct: 22  VLGDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKV 61


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 14/46 (30%), Positives = 20/46 (43%)
 Frame = -3

Query: 163 RDALDVITQHLPVTFSAPLSKTFASFTATGHLDELLGLCFVLVVAA 26
           R AL V T     T  +  +      +    +D  LG CFV+V A+
Sbjct: 252 RVALGVTTVLTMTTLMSSTNAALPKISYVKSIDVYLGTCFVMVFAS 297


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 14/46 (30%), Positives = 20/46 (43%)
 Frame = -3

Query: 163 RDALDVITQHLPVTFSAPLSKTFASFTATGHLDELLGLCFVLVVAA 26
           R AL V T     T  +  +      +    +D  LG CFV+V A+
Sbjct: 252 RVALGVTTVLTMTTLMSSTNAALPKISYVKSIDVYLGTCFVMVFAS 297


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 14/46 (30%), Positives = 20/46 (43%)
 Frame = -3

Query: 163 RDALDVITQHLPVTFSAPLSKTFASFTATGHLDELLGLCFVLVVAA 26
           R AL V T     T  +  +      +    +D  LG CFV+V A+
Sbjct: 191 RVALGVTTVLTMTTLMSSTNAALPKISYVKSIDVYLGTCFVMVFAS 236


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = -1

Query: 258 EDTLRTPRVSSYIRPEMRFTPPLRAKR 178
           +D ++T  ++ +  PE++ TP  +AKR
Sbjct: 388 QDVVQTHVLTIHTIPEVKVTPRFQAKR 414


>DQ435329-1|ABD92644.1|  150|Apis mellifera OBP12 protein.
          Length = 150

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 11/38 (28%), Positives = 17/38 (44%), Gaps = 3/38 (7%)
 Frame = +3

Query: 243 FSKCPRKRDPRRCHIHRTRQEEDRHRYGC---CVRSET 347
           F +  + RD     I    +EE+   YGC   C+  +T
Sbjct: 42  FHELKKLRDSSEARIKLINEEENFRNYGCFLACIWQQT 79


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -1

Query: 336 VHNIHSGDGLPLGVFG 289
           VHN+H   G+  G+FG
Sbjct: 331 VHNLHGMPGILGGIFG 346


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3

Query: 3   SSRNALKSAATTNTKHKPRSSS 68
           SS   L +AAT++T   PR +S
Sbjct: 825 SSPRYLSAAATSSTSTSPRPAS 846


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,812
Number of Sequences: 438
Number of extensions: 3751
Number of successful extensions: 14
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23911269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)