Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0475
         (594 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C2.11c |||mitochondrial outer membrane protein |Schizosacc...    27   1.6  
SPCC965.11c |||amino acid transporter |Schizosaccharomyces pombe...    27   2.1  
SPAC4H3.11c |ppc89|mug127|spindle pole body protein Ppc89|Schizo...    25   6.3  
SPAC23C11.12 |hcn1||anaphase-promoting complex subunit Hcn1|Schi...    25   8.3  
SPBC17F3.01c |rga5|SPBC557.01|GTPase activating protein Rga5|Sch...    25   8.3  
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual      25   8.3  
SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr...    25   8.3  

>SPBC19C2.11c |||mitochondrial outer membrane protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 20/74 (27%), Positives = 34/74 (45%)
 Frame = +1

Query: 295 LREGQRNIHPSVKKLLGKKEVDISEIFKSRAPRNKSKKDYSAMLQKRNYTISADSTKTLR 474
           + E       S +  +G K VD++E      P   +K   +    KRNYTI+ +  + L+
Sbjct: 358 IHEASNKSASSSETFVGSKNVDLTESAFDSIPDTPTKIITNINKLKRNYTITNNWLENLQ 417

Query: 475 PNMEIKTEPAAGRV 516
              +I +E   G+V
Sbjct: 418 --QKIPSEVDNGKV 429


>SPCC965.11c |||amino acid transporter |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 537

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 16/71 (22%), Positives = 33/71 (46%)
 Frame = -1

Query: 564 SARWRSASEHAGSSLVYSSCSGFSFDLHVGAERLRGVCRDGVVTFLQHGRIIFLRFIPRG 385
           +A W  A +   + ++ +  S  +  +++G+  L  + +DG+         IF R   RG
Sbjct: 309 NAGWNHAGDFVNAVILITCLSSINSGIYIGSRSLYNLAKDGMAP------KIFKRVDKRG 362

Query: 384 SAFEYLRNVHL 352
             +  + +VHL
Sbjct: 363 VPWVAVHSVHL 373


>SPAC4H3.11c |ppc89|mug127|spindle pole body protein
           Ppc89|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 783

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -1

Query: 426 QHGRIIFLRFIPRGSAFEYLRNVHLLLAEQF 334
           +H R+  L  IP  S  E L N H LL ++F
Sbjct: 270 EHDRLPELNTIPVASTDEQLFNAHQLLEKKF 300


>SPAC23C11.12 |hcn1||anaphase-promoting complex subunit
           Hcn1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 80

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = +1

Query: 262 DPKSKAEISTLLREGQRNIHPSVKKLLGKKEVDISEIFKS 381
           D +S  E +    E    + P  KK++ ++ + I++IF S
Sbjct: 29  DSESTTEEALQKNEESTRLSPEKKKIIRERRIGITQIFDS 68


>SPBC17F3.01c |rga5|SPBC557.01|GTPase activating protein
           Rga5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 361

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = -1

Query: 588 DSWFPRPESA-RWRSASEHAGSSLVYSSCSGFS 493
           +S+ PR  S  RWRS S H+ ++   S  S FS
Sbjct: 287 NSFNPRNGSIKRWRSFSRHSSATYSNSPSSNFS 319


>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1202

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = +2

Query: 59   EKIKSIIRREFQNELEARQSEVVLI 133
            +++KSII+ EF N +  R + + +I
Sbjct: 957  DRVKSIIKNEFSNVMPIRGARIPII 981


>SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1225

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +3

Query: 498 TRCRTSRPKKIPRALKPSATV 560
           T  +TS+PKKI   L PS  V
Sbjct: 886 TSVKTSKPKKISELLMPSEAV 906


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,267,758
Number of Sequences: 5004
Number of extensions: 43574
Number of successful extensions: 134
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)