Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0475
         (594 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1693 + 35404336-35404515,35405732-35406019,35406189-354062...    29   3.7  
03_01_0471 + 3629158-3629185,3630027-3630058,3630272-3630344,363...    28   6.5  
12_02_1156 - 26547599-26547662,26547793-26547922,26548009-26548105     27   8.5  
05_03_0237 + 10765061-10765507,10766438-10766567,10768485-10768705     27   8.5  
03_03_0188 + 15269347-15270213                                         27   8.5  

>04_04_1693 +
           35404336-35404515,35405732-35406019,35406189-35406278,
           35406487-35406564,35406638-35406718,35407300-35407350,
           35407788-35407933,35408169-35408235,35408328-35408387,
           35408472-35408501,35408776-35408835,35408936-35409052,
           35409790-35409903,35410068-35410166,35410572-35410697,
           35410774-35410848,35410958-35411029,35411167-35411277,
           35411760-35411843,35413149-35413256,35414207-35414308,
           35414393-35414455,35414524-35414598,35414901-35414972,
           35415063-35415187,35415251-35415302,35415380-35415448,
           35415525-35415540,35415941-35415989,35416607-35417180
          Length = 1077

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = +2

Query: 185 LVSNY-YNDLKLKLSNAQVEDEIAESKTPSRKPRYQHCYARGSVT 316
           L+SN  Y+D    L++A+VEDE    +    KPR+      GS T
Sbjct: 329 LLSNMSYSDDDESLADAEVEDESFPDRDQDLKPRFHASRLHGSET 373


>03_01_0471 +
           3629158-3629185,3630027-3630058,3630272-3630344,
           3630745-3630969,3631319-3631789,3632286-3633118
          Length = 553

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 14/28 (50%), Positives = 20/28 (71%)
 Frame = -2

Query: 302 SRSNVDISAFDLGSLIQRSHLQPAHSII 219
           SRSNVD+S  ++ S  + SHL  AHS++
Sbjct: 379 SRSNVDLS--NMSSRPRASHLASAHSLV 404


>12_02_1156 - 26547599-26547662,26547793-26547922,26548009-26548105
          Length = 96

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +2

Query: 179 YALVSNYYNDLKLKLSNAQVEDEIAESKTPSRKPR 283
           Y+L   +  DLKL ++ AQ + E  E + P R PR
Sbjct: 18  YSLHRRFLADLKLSIARAQQQQEQQEQEKPQR-PR 51


>05_03_0237 + 10765061-10765507,10766438-10766567,10768485-10768705
          Length = 265

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = +1

Query: 271 SKAEISTLLREGQRNIHPSVKKLLGKKEVDISEIFKSRAPRNKSKK 408
           S+ ++   L      +HP++K LL   E  I  I  SRAP  K  K
Sbjct: 221 SELDVGQKLLMRDLKVHPALK-LLQSPEQPICSIIGSRAPEQKKSK 265


>03_03_0188 + 15269347-15270213
          Length = 288

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 16/36 (44%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
 Frame = +3

Query: 468 APPQHGDQN*TRCRTSRPKKIPRA-LKPSATVLTLD 572
           APP H            PKK PRA  +P  TVLT D
Sbjct: 72  APPPHPPPPAPTSNNKPPKKRPRASRRPPTTVLTTD 107


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,095,371
Number of Sequences: 37544
Number of extensions: 335433
Number of successful extensions: 1190
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1190
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)