BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e40h0475 (594 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 04_04_1693 + 35404336-35404515,35405732-35406019,35406189-354062... 29 3.7 03_01_0471 + 3629158-3629185,3630027-3630058,3630272-3630344,363... 28 6.5 12_02_1156 - 26547599-26547662,26547793-26547922,26548009-26548105 27 8.5 05_03_0237 + 10765061-10765507,10766438-10766567,10768485-10768705 27 8.5 03_03_0188 + 15269347-15270213 27 8.5 >04_04_1693 + 35404336-35404515,35405732-35406019,35406189-35406278, 35406487-35406564,35406638-35406718,35407300-35407350, 35407788-35407933,35408169-35408235,35408328-35408387, 35408472-35408501,35408776-35408835,35408936-35409052, 35409790-35409903,35410068-35410166,35410572-35410697, 35410774-35410848,35410958-35411029,35411167-35411277, 35411760-35411843,35413149-35413256,35414207-35414308, 35414393-35414455,35414524-35414598,35414901-35414972, 35415063-35415187,35415251-35415302,35415380-35415448, 35415525-35415540,35415941-35415989,35416607-35417180 Length = 1077 Score = 28.7 bits (61), Expect = 3.7 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%) Frame = +2 Query: 185 LVSNY-YNDLKLKLSNAQVEDEIAESKTPSRKPRYQHCYARGSVT 316 L+SN Y+D L++A+VEDE + KPR+ GS T Sbjct: 329 LLSNMSYSDDDESLADAEVEDESFPDRDQDLKPRFHASRLHGSET 373 >03_01_0471 + 3629158-3629185,3630027-3630058,3630272-3630344, 3630745-3630969,3631319-3631789,3632286-3633118 Length = 553 Score = 27.9 bits (59), Expect = 6.5 Identities = 14/28 (50%), Positives = 20/28 (71%) Frame = -2 Query: 302 SRSNVDISAFDLGSLIQRSHLQPAHSII 219 SRSNVD+S ++ S + SHL AHS++ Sbjct: 379 SRSNVDLS--NMSSRPRASHLASAHSLV 404 >12_02_1156 - 26547599-26547662,26547793-26547922,26548009-26548105 Length = 96 Score = 27.5 bits (58), Expect = 8.5 Identities = 14/35 (40%), Positives = 20/35 (57%) Frame = +2 Query: 179 YALVSNYYNDLKLKLSNAQVEDEIAESKTPSRKPR 283 Y+L + DLKL ++ AQ + E E + P R PR Sbjct: 18 YSLHRRFLADLKLSIARAQQQQEQQEQEKPQR-PR 51 >05_03_0237 + 10765061-10765507,10766438-10766567,10768485-10768705 Length = 265 Score = 27.5 bits (58), Expect = 8.5 Identities = 16/46 (34%), Positives = 22/46 (47%) Frame = +1 Query: 271 SKAEISTLLREGQRNIHPSVKKLLGKKEVDISEIFKSRAPRNKSKK 408 S+ ++ L +HP++K LL E I I SRAP K K Sbjct: 221 SELDVGQKLLMRDLKVHPALK-LLQSPEQPICSIIGSRAPEQKKSK 265 >03_03_0188 + 15269347-15270213 Length = 288 Score = 27.5 bits (58), Expect = 8.5 Identities = 16/36 (44%), Positives = 17/36 (47%), Gaps = 1/36 (2%) Frame = +3 Query: 468 APPQHGDQN*TRCRTSRPKKIPRA-LKPSATVLTLD 572 APP H PKK PRA +P TVLT D Sbjct: 72 APPPHPPPPAPTSNNKPPKKRPRASRRPPTTVLTTD 107 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 16,095,371 Number of Sequences: 37544 Number of extensions: 335433 Number of successful extensions: 1190 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 1164 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1190 length of database: 14,793,348 effective HSP length: 78 effective length of database: 11,864,916 effective search space used: 1411925004 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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