Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0475
         (594 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24812| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.70 
SB_56694| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.2  
SB_44656| Best HMM Match : 7tm_1 (HMM E-Value=0)                       30   1.2  
SB_40157| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.1  
SB_12239| Best HMM Match : CPSF_A (HMM E-Value=1.2)                    29   2.8  
SB_8396| Best HMM Match : Spb1_C (HMM E-Value=0.65)                    29   2.8  
SB_13066| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.7  
SB_41025| Best HMM Match : APC_crr (HMM E-Value=6.7)                   29   3.7  
SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20)                  28   4.9  
SB_13356| Best HMM Match : BACK (HMM E-Value=5.1e-16)                  28   4.9  
SB_47621| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.5  
SB_21074| Best HMM Match : NadA (HMM E-Value=2)                        28   6.5  
SB_15522| Best HMM Match : DUF590 (HMM E-Value=5.8)                    28   6.5  
SB_12264| Best HMM Match : Filament (HMM E-Value=0.0075)               28   6.5  
SB_2495| Best HMM Match : Pox_A_type_inc (HMM E-Value=8.2e-11)         28   6.5  
SB_58198| Best HMM Match : Exo_endo_phos (HMM E-Value=0.012)           27   8.6  
SB_18097| Best HMM Match : NadA (HMM E-Value=2.2)                      27   8.6  
SB_13311| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  

>SB_24812| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1384

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 13/41 (31%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
 Frame = +1

Query: 379 SRAPRNKSKKDYSAMLQKRNYTISADSTKTLRPNM-EIKTE 498
           +R   N+S++DYS   + + Y ++A++ +TLR  + E++ E
Sbjct: 711 NRNVTNESRRDYSVTTESKQYYVNAENEETLRSEINELRRE 751


>SB_56694| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 409

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -3

Query: 457 SLPRWCSYVSAAWPNNLS*IYSSGLCF*IS 368
           S+P W +Y+   WP   S IY+  LCF I+
Sbjct: 73  SMPLWFTYLVFQWPPQNSEIYALWLCFDIA 102


>SB_44656| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 409

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -3

Query: 457 SLPRWCSYVSAAWPNNLS*IYSSGLCF*IS 368
           S+P W +Y+   WP   S IY+  LCF I+
Sbjct: 73  SMPLWFTYLVFQWPPQNSEIYALWLCFDIA 102


>SB_40157| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 312

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 19/77 (24%), Positives = 40/77 (51%)
 Frame = +1

Query: 262 DPKSKAEISTLLREGQRNIHPSVKKLLGKKEVDISEIFKSRAPRNKSKKDYSAMLQKRNY 441
           D   K++ S+ L++  ++   ++ K L   ++ +   F+ +A RNKSK+  +  L + N 
Sbjct: 218 DALGKSQYSSFLKDVIKDRTVTIGKSLKHNKLPL---FRKQASRNKSKQSKTISLLQNNV 274

Query: 442 TISADSTKTLRPNMEIK 492
            + A   ++    +EIK
Sbjct: 275 ALFAQLYRSSMVTVEIK 291


>SB_12239| Best HMM Match : CPSF_A (HMM E-Value=1.2)
          Length = 864

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -1

Query: 474 AERLRGVCRDGVVTFLQHGRIIFLRFIPRGSAFE 373
           A RL G  +D +V     GRI+ L +IP  + FE
Sbjct: 67  AFRLTGGSKDFIVVGSDSGRIVILEYIPSKNVFE 100


>SB_8396| Best HMM Match : Spb1_C (HMM E-Value=0.65)
          Length = 1007

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 3/86 (3%)
 Frame = +1

Query: 259 KDPKSKAEISTLLREGQRNIHPSVKKLLGKKEVDISEIFKSRAPRNKSKKDYSAMLQKRN 438
           K P +K   S LL     +    V+KLL KK         S    +  ++    ++++  
Sbjct: 207 KTPTTKMTSSLLLASSHTSASSPVEKLLKKKMKSSPSATSSPGALSPVER----LVERMT 262

Query: 439 YTISADST---KTLRPNMEIKTEPAA 507
            T+ + ST   KT  PN+ + T+PA+
Sbjct: 263 PTLMSSSTSPVKTKSPNVTVSTKPAS 288


>SB_13066| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 865

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 15/54 (27%), Positives = 26/54 (48%)
 Frame = +2

Query: 41  AQEEKVEKIKSIIRREFQNELEARQSEVVLIDQXXXXXXXXXXXXXYALVSNYY 202
           A++  V KI+ II+ +F  E+  ++ EV LID                +++ YY
Sbjct: 42  AKDLAVNKIEKIIQDQFALEIRLKEKEVELIDHRISQTKAMLDRLRACVLARYY 95


>SB_41025| Best HMM Match : APC_crr (HMM E-Value=6.7)
          Length = 274

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 14/50 (28%), Positives = 26/50 (52%)
 Frame = +1

Query: 358 DISEIFKSRAPRNKSKKDYSAMLQKRNYTISADSTKTLRPNMEIKTEPAA 507
           D S  F  R+P   S KD+S+ L +R+  I++  + T   +   ++ P +
Sbjct: 84  DHSSAFCERSPNVTSHKDHSSALSERSPNITSQKSHTSADSTPARSPPGS 133


>SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20)
          Length = 1313

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 19/64 (29%), Positives = 32/64 (50%)
 Frame = +1

Query: 271  SKAEISTLLREGQRNIHPSVKKLLGKKEVDISEIFKSRAPRNKSKKDYSAMLQKRNYTIS 450
            SK +I +L   G+R+  PS  +   K +   +   + R+P  K KKD  A  Q  + + S
Sbjct: 960  SKMQIKSL--RGRRSRSPSPVRRKDKDKEKRTSSTRGRSPTRKDKKDKPARRQSSSSSSS 1017

Query: 451  ADST 462
            + S+
Sbjct: 1018 SSSS 1021


>SB_13356| Best HMM Match : BACK (HMM E-Value=5.1e-16)
          Length = 1155

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 20/50 (40%), Positives = 23/50 (46%)
 Frame = -1

Query: 582  WFPRPESARWRSASEHAGSSLVYSSCSGFSFDLHVGAERLRGVCRDGVVT 433
            W    ES+ WR  S     SL Y  C G +  LH     L G  RDGVV+
Sbjct: 970  WSLHSESSEWRQLS-----SLAYP-CWGSALVLHADKIYLIGGLRDGVVS 1013


>SB_47621| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 591

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 13/44 (29%), Positives = 27/44 (61%)
 Frame = +1

Query: 322 PSVKKLLGKKEVDISEIFKSRAPRNKSKKDYSAMLQKRNYTISA 453
           P++K+L+ K++   S + +++   NKS + + A  Q+RN  + A
Sbjct: 220 PTIKRLMRKRD---SLLLRAKRSNNKSSEVWRAYRQQRNKVVKA 260


>SB_21074| Best HMM Match : NadA (HMM E-Value=2)
          Length = 358

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 13/44 (29%), Positives = 27/44 (61%)
 Frame = +1

Query: 322 PSVKKLLGKKEVDISEIFKSRAPRNKSKKDYSAMLQKRNYTISA 453
           P++K+L+ K++   S + +++   NKS + + A  Q+RN  + A
Sbjct: 61  PTIKRLMRKRD---SLLLRAKRSNNKSSEVWRAYRQQRNKVVKA 101


>SB_15522| Best HMM Match : DUF590 (HMM E-Value=5.8)
          Length = 339

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 13/44 (29%), Positives = 27/44 (61%)
 Frame = +1

Query: 322 PSVKKLLGKKEVDISEIFKSRAPRNKSKKDYSAMLQKRNYTISA 453
           P++K+L+ K++   S + +++   NKS + + A  Q+RN  + A
Sbjct: 61  PTIKRLMRKRD---SLLLRAKRSNNKSSEVWRAYRQQRNKVVKA 101


>SB_12264| Best HMM Match : Filament (HMM E-Value=0.0075)
          Length = 762

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 17/44 (38%), Positives = 28/44 (63%)
 Frame = +1

Query: 271 SKAEISTLLREGQRNIHPSVKKLLGKKEVDISEIFKSRAPRNKS 402
           SK E++TL R      + S++++LG+KE +IS +  S   RN+S
Sbjct: 307 SKDELNTL-RNSFAEEYSSLQQMLGEKENEISLLEASLNERNQS 349


>SB_2495| Best HMM Match : Pox_A_type_inc (HMM E-Value=8.2e-11)
          Length = 2024

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 11/70 (15%)
 Frame = +1

Query: 280  EISTLLREGQRNIHPSVKK--------LLGK-KEVD--ISEIFKSRAPRNKSKKDYSAML 426
            EI ++  EGQRN+   V+K        ++GK KE+    +++FK +     SK++ ++  
Sbjct: 1251 EIVSIKNEGQRNVTIQVEKRVEIYKNEIMGKEKEMQQLRTQVFKLQEEVEASKREITSAH 1310

Query: 427  QKRNYTISAD 456
             K  YTI+ +
Sbjct: 1311 TKSEYTITVE 1320


>SB_58198| Best HMM Match : Exo_endo_phos (HMM E-Value=0.012)
          Length = 816

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 15/64 (23%), Positives = 31/64 (48%), Gaps = 8/64 (12%)
 Frame = -1

Query: 525 SLVYSSCSGFSFDLHVGAERLR--------GVCRDGVVTFLQHGRIIFLRFIPRGSAFEY 370
           ++V    SG+ +DLHVG + ++        GV  D  +T+ +H   +  +   + +A   
Sbjct: 649 AMVLGRNSGYEYDLHVGPDHIKVETTLKILGVTLDSSLTYKEHITTVLKKVYAKVAALRR 708

Query: 369 LRNV 358
           ++ V
Sbjct: 709 IKRV 712


>SB_18097| Best HMM Match : NadA (HMM E-Value=2.2)
          Length = 272

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 13/44 (29%), Positives = 26/44 (59%)
 Frame = +1

Query: 322 PSVKKLLGKKEVDISEIFKSRAPRNKSKKDYSAMLQKRNYTISA 453
           P++K+L+ K++   S + + +   NKS + + A  Q+RN  + A
Sbjct: 3   PTIKRLMRKRD---SLLLRDKRSNNKSSEVWRAYRQQRNKVVKA 43


>SB_13311| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6406

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +2

Query: 194  NYYNDLKLKLSNAQVEDEIAESKTPSRKPRYQ 289
            N+++D+K KL +A+ ED+ AE +    K   Q
Sbjct: 4406 NWFDDMKGKLEDARAEDQEAEDEQKKLKDLQQ 4437


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,491,421
Number of Sequences: 59808
Number of extensions: 335765
Number of successful extensions: 1009
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 956
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1008
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1427401750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)