Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0474
         (735 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    25   0.63 
AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       22   4.5  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    22   5.9  

>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 25.0 bits (52), Expect = 0.63
 Identities = 10/19 (52%), Positives = 14/19 (73%), Gaps = 1/19 (5%)
 Frame = -1

Query: 291 GINS-ICWCCPGYSTAGCR 238
           GINS IC C PG++ + C+
Sbjct: 41  GINSYICTCKPGFTGSNCQ 59


>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = -1

Query: 294 PGINSICWCCPGYSTAGC 241
           PG+   C C PG++   C
Sbjct: 48  PGVGHRCQCQPGFTGKYC 65


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 10/33 (30%), Positives = 13/33 (39%)
 Frame = +1

Query: 373 PSSSLTVTSNSEPINSYRPWQSTQRPYFTTTPT 471
           P      T  S P  +Y  W + Q P    +PT
Sbjct: 288 PDHIQQATPYSAPGPTYSTWSTVQTPTTVMSPT 320


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,898
Number of Sequences: 336
Number of extensions: 4472
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19675845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)