Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0474
(735 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 30 0.39
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 30 0.39
SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1 ... 27 2.1
SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces pom... 27 2.1
SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 27 2.1
SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|c... 27 2.8
SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ... 27 3.7
SPBC1711.16 |||WD repeat protein Pwp1 |Schizosaccharomyces pombe... 27 3.7
SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3 ... 26 6.4
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 26 6.4
SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat protei... 26 6.4
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca... 26 6.4
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 25 8.5
SPBP8B7.20c |||RNA methyltransferase Nop2 |Schizosaccharomyces p... 25 8.5
SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein Usp102|Schi... 25 8.5
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 29.9 bits (64), Expect = 0.39
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = +2
Query: 140 SEAIKSASPQPRYILAQSRTVSRPITIDFLPGRRQPAVEYPG 265
SEA K A+ PR IL S+ + + I PG+ P ++Y G
Sbjct: 376 SEAAKVAASSPRGILRTSQVIDQFKLIQAAPGQIAPILQYFG 417
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 29.9 bits (64), Expect = 0.39
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +3
Query: 525 GASAGTSIPPFLPSGTGVTSHITGITDGQPRPTLPQPVQTNYP 653
G S+ ++ PP P+ S + T PRP++P P + P
Sbjct: 116 GKSSASAAPPSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAP 158
>SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 767
Score = 27.5 bits (58), Expect = 2.1
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = +3
Query: 12 CQNSNSFLFCHSCTT 56
C+NSN+ +FC +C T
Sbjct: 205 CENSNAIVFCDNCNT 219
>SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 329
Score = 27.5 bits (58), Expect = 2.1
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = -2
Query: 620 GSWLTICYSCNVRCHS 573
GS +CYSC++ CH+
Sbjct: 57 GSLNAVCYSCSISCHA 72
>SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 513
Score = 27.5 bits (58), Expect = 2.1
Identities = 24/68 (35%), Positives = 27/68 (39%)
Frame = +3
Query: 522 PGASAGTSIPPFLPSGTGVTSHITGITDGQPRPTLPQPVQTNYPYPQSNTFQTTDKPLPA 701
P ASA T PS H+TG P L QP +Y FQ T P+
Sbjct: 181 PFASAQTQGQEHRPSSPNPAEHMTGAYVNTP---LNQP--PSYAASTQPEFQQTTSPI-- 233
Query: 702 LVSSQTPP 725
SS TPP
Sbjct: 234 FSSSSTPP 241
>SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 566
Score = 27.1 bits (57), Expect = 2.8
Identities = 22/75 (29%), Positives = 30/75 (40%), Gaps = 7/75 (9%)
Frame = +3
Query: 528 ASAGTSIPPFLPSGTGVTSHITGITDGQP-------RPTLPQPVQTNYPYPQSNTFQTTD 686
+S +P +PS + + SH P +P L Q V T P P SNTF
Sbjct: 4 SSQNVLLPSPIPSSSPMASHKKSWLSKHPNQSMTFEKPQLGQFVLT--PEPSSNTFYAPS 61
Query: 687 KPLPALVSSQTPPLS 731
P A+ P+S
Sbjct: 62 SPASAVRREPLSPMS 76
>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1429
Score = 26.6 bits (56), Expect = 3.7
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = +3
Query: 483 HKCNNLAQLIIMYPGASAGTSIPPFLPSGTGVTSHITGITDG 608
H N A+L++ GA+ G ++ G+ + +TG+ DG
Sbjct: 1213 HAANKGAKLVVGGVGAAGGLALAGVTTIGSVGSKAVTGVADG 1254
>SPBC1711.16 |||WD repeat protein Pwp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 516
Score = 26.6 bits (56), Expect = 3.7
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +1
Query: 49 VPRSKCSGTTERLTLLWNFLRSGPK 123
VP +G+T+R+ LWN S PK
Sbjct: 395 VPSFVATGSTDRVVKLWNTSDSSPK 419
>SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 932
Score = 25.8 bits (54), Expect = 6.4
Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Frame = +3
Query: 633 PVQTNYP-YPQSNTFQTTDKPLPALVSSQTPPLS 731
P N P YP + KP+P + QT PLS
Sbjct: 404 PTVNNLPSYPTNLARPKAIKPMPTSIHGQTSPLS 437
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 25.8 bits (54), Expect = 6.4
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = +2
Query: 80 SGLHYYGTSYVRDQSPSITTSEAIKSASPQPRYI 181
SG + +SYV D +PS+ ++ ++ S S P+ +
Sbjct: 1483 SGEGEFQSSYVPDYNPSLRSTPSVSSRSTLPQRV 1516
>SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 945
Score = 25.8 bits (54), Expect = 6.4
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +3
Query: 612 PRPTLPQPVQTNYPYPQSNTFQTTDKPLPALVSSQTPPLSI 734
P+P P+P +N YP ++ K +PA+ PP SI
Sbjct: 536 PKPLTPKPSDSNSLYPLPHSKVGRRKNIPAIT---VPPPSI 573
>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 2410
Score = 25.8 bits (54), Expect = 6.4
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = +2
Query: 506 INHNVPGSISGNFNTTISSKWN 571
INH+ PG++ ++T S W+
Sbjct: 870 INHSAPGAVLFRYSTDFQSHWS 891
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 25.4 bits (53), Expect = 8.5
Identities = 17/64 (26%), Positives = 23/64 (35%)
Frame = +3
Query: 531 SAGTSIPPFLPSGTGVTSHITGITDGQPRPTLPQPVQTNYPYPQSNTFQTTDKPLPALVS 710
+ TSIPP S T VT + + P T T+ PY + T S
Sbjct: 394 TTSTSIPPTGNSTTPVTPTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTS 453
Query: 711 SQTP 722
+ P
Sbjct: 454 TSVP 457
>SPBP8B7.20c |||RNA methyltransferase Nop2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 608
Score = 25.4 bits (53), Expect = 8.5
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = +3
Query: 561 PSGTGVTSHITGITDGQPRPTLPQ 632
P V I G TD QP TLPQ
Sbjct: 166 PEAPTVLPPIDGFTDSQPISTLPQ 189
>SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein
Usp102|Schizosaccharomyces pombe|chr 2|||Manual
Length = 249
Score = 25.4 bits (53), Expect = 8.5
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +3
Query: 657 PQSNTFQTTDKPLPALVSSQTP 722
PQ+N+ Q +P P SQTP
Sbjct: 3 PQTNSHQEVQQPSPKETDSQTP 24
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,107,167
Number of Sequences: 5004
Number of extensions: 66022
Number of successful extensions: 256
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 239
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 256
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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