Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0474
(735 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0004 - 34967-35149,35340-35501,36078-36225,36309-36385,365... 35 0.077
01_07_0213 - 42028941-42029055,42029444-42029480,42029876-420302... 33 0.18
06_03_1273 + 28892774-28893946,28894964-28895104,28895277-288953... 33 0.24
03_01_0515 - 3864796-3865425 32 0.54
12_02_0995 + 25104303-25104486,25105164-25105275,25106466-251065... 30 2.2
01_06_1349 + 36493358-36493384,36493535-36493663,36493922-364940... 30 2.2
06_03_0809 + 24814590-24816593 29 2.9
03_06_0352 - 33312443-33312652,33312747-33312854,33313224-333133... 29 3.8
01_05_0062 + 17755460-17755522,17756878-17756953,17757074-177571... 29 3.8
01_01_0083 + 631196-631675 29 3.8
06_01_0974 + 7541771-7542553,7542666-7542795,7543098-7543645,754... 29 5.1
03_01_0170 + 1389759-1391159 29 5.1
08_02_0995 - 23401390-23402379 28 6.7
07_03_1584 + 27907345-27907357,27907693-27908039,27908202-279083... 28 6.7
07_03_1304 - 25629822-25629839,25630091-25631148,25631784-256349... 28 6.7
04_04_0677 + 27195264-27195291,27196034-27196271,27196350-271965... 28 6.7
01_06_0747 - 31645136-31646521,31647870-31648142,31649080-316491... 28 6.7
06_01_1169 + 9996068-9996265,9996356-9998589,9998675-9998926,999... 28 8.8
>05_01_0004 -
34967-35149,35340-35501,36078-36225,36309-36385,
36507-36577,36850-37263,37518-38268
Length = 601
Score = 34.7 bits (76), Expect = 0.077
Identities = 21/68 (30%), Positives = 25/68 (36%)
Frame = +3
Query: 522 PGASAGTSIPPFLPSGTGVTSHITGITDGQPRPTLPQPVQTNYPYPQSNTFQTTDKPLPA 701
P + TS PP P T + P P P P N P P Q PLP
Sbjct: 51 PADTTPTSPPPASPPLPSATPPLAA----SPPPPPPPPPPRNSPSPPKPPSQAAQSPLPP 106
Query: 702 LVSSQTPP 725
++ TPP
Sbjct: 107 TTTTTTPP 114
>01_07_0213 -
42028941-42029055,42029444-42029480,42029876-42030244,
42030332-42031201,42051574-42052891
Length = 902
Score = 33.5 bits (73), Expect = 0.18
Identities = 25/81 (30%), Positives = 30/81 (37%), Gaps = 6/81 (7%)
Frame = +3
Query: 480 HHKCNNLAQLIIMYPGASAGTSIPPFLPSGTGVTSHITGITDG------QPRPTLPQPVQ 641
HH ++ A A+A I P L +G V G QP P LP
Sbjct: 537 HHHHHHEAAAAAAAAAAAAADPIFPLLSAGPCVLDPDKSAASGSAIQFWQPPPQLPSSAA 596
Query: 642 TNYPYPQSNTFQTTDKPLPAL 704
P P S+ F KPLP L
Sbjct: 597 GGNPNPSSSAFPYLKKPLPML 617
>06_03_1273 +
28892774-28893946,28894964-28895104,28895277-28895329,
28895852-28895966
Length = 493
Score = 33.1 bits (72), Expect = 0.24
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +3
Query: 531 SAGTSIPPFLPSGTGVTSHITGITDGQPRPTLPQPVQT-NYPYPQSNTFQ 677
S+ +PPF G G +H+ T P P P P+++ + P P S+ F+
Sbjct: 108 SSSDLLPPFPVLGNGSAAHLLRDTPPPPTPRCPAPIKSCSSPAPVSSVFR 157
>03_01_0515 - 3864796-3865425
Length = 209
Score = 31.9 bits (69), Expect = 0.54
Identities = 22/77 (28%), Positives = 32/77 (41%), Gaps = 1/77 (1%)
Frame = +3
Query: 498 LAQLIIMYPGASAGTSIPPFLPSGTGVTSHITGITDGQPRPTLPQP-VQTNYPYPQSNTF 674
LA ++ A T+ P PS S + T+ P P P P V ++ P P +
Sbjct: 11 LATFVVAIANADDYTTAAP-APSPEAEASPPSPPTEASPPPLAPPPSVTSSPPPPAAGPL 69
Query: 675 QTTDKPLPALVSSQTPP 725
P P++ SS PP
Sbjct: 70 MPPPPPPPSVTSSPPPP 86
>12_02_0995 +
25104303-25104486,25105164-25105275,25106466-25106554,
25106635-25106703,25106784-25106913,25107073-25107231,
25107364-25107736,25108070-25108182,25108429-25108624,
25108855-25109288,25109360-25109495,25109668-25111086
Length = 1137
Score = 29.9 bits (64), Expect = 2.2
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = +2
Query: 119 QSPSITTSEAIKSASPQPRYILAQSRTVSRPITIDFLPGRRQPA 250
Q P+++ SEA K S Q+ TVSRP++ +P +Q A
Sbjct: 771 QVPTVSKSEAQKQTSLVSSGTATQAITVSRPLSAPQVPAAKQTA 814
>01_06_1349 +
36493358-36493384,36493535-36493663,36493922-36494062,
36495005-36495144,36496292-36496412,36496418-36496924
Length = 354
Score = 29.9 bits (64), Expect = 2.2
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 5/32 (15%)
Frame = -1
Query: 255 STAGCRLPGRK-----SIVIGLDTVRDCAKMY 175
++ G RLPGRK I+ G+ TV+DC+ Y
Sbjct: 199 TSTGSRLPGRKRLLWSPIIFGVTTVKDCSVQY 230
>06_03_0809 + 24814590-24816593
Length = 667
Score = 29.5 bits (63), Expect = 2.9
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 6/83 (7%)
Frame = +2
Query: 23 KFIFILPLLYHAVNAAEQQSGLHYYGTSYVRDQSPSITTSEAIKSASPQP----RYILAQ 190
+F+ ++ LL + AA+QQ + G Y D S+ +ASP P Y+ +
Sbjct: 6 RFLLLVVLLAVPMTAAQQQYEANAQGDCYT-DNGSSVLGYTCGTAASPPPPPCTAYLTFR 64
Query: 191 SR--TVSRPITIDFLPGRRQPAV 253
S + + PIT+ +L PAV
Sbjct: 65 SAPPSYASPITVSYLLNASVPAV 87
>03_06_0352 -
33312443-33312652,33312747-33312854,33313224-33313397,
33313489-33313695,33313700-33313987,33314087-33314319,
33314450-33315263
Length = 677
Score = 29.1 bits (62), Expect = 3.8
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +3
Query: 525 GASAGTSIPPFLPSGTGVTSHITGITDGQPRPTLPQ 632
G G + LP G GV SH+T + +PRP P+
Sbjct: 156 GGGNGGGVTVELPCGMGVGSHVTVV--ARPRPARPE 189
>01_05_0062 +
17755460-17755522,17756878-17756953,17757074-17757145,
17757274-17757361,17757793-17758033,17759461-17759576,
17759804-17760021,17760210-17760241,17760338-17760440,
17760531-17760805
Length = 427
Score = 29.1 bits (62), Expect = 3.8
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 53 HAVNAAEQQSGLHYYGTSYVRDQSPSITTSEAIKS 157
H V + G++ Y YVRDQ P+ TT + S
Sbjct: 250 HMVKGSIDYVGINQYTAYYVRDQQPNATTLPSYSS 284
>01_01_0083 + 631196-631675
Length = 159
Score = 29.1 bits (62), Expect = 3.8
Identities = 15/35 (42%), Positives = 17/35 (48%)
Frame = +3
Query: 627 PQPVQTNYPYPQSNTFQTTDKPLPALVSSQTPPLS 731
P PV T+ P P S P P+ SS TPP S
Sbjct: 37 PTPVTTDCPPPPSTPSSGYSYPPPSSSSSNTPPSS 71
>06_01_0974 +
7541771-7542553,7542666-7542795,7543098-7543645,
7544482-7544864,7546670-7546766
Length = 646
Score = 28.7 bits (61), Expect = 5.1
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +2
Query: 545 NTTISSKWNRSDIAHYRNNRWSTKTHTSAARS 640
NT ++ + R + A Y++ RW H AAR+
Sbjct: 597 NTVVAQEARRQNSAQYKSRRWCHGDHPRAART 628
>03_01_0170 + 1389759-1391159
Length = 466
Score = 28.7 bits (61), Expect = 5.1
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = +2
Query: 98 GTSYVRDQSPSITTSEAIKSASPQPRYILAQSRTVSRPITIDFLPGRR 241
G + R +SP+ T A SA+PQP + A +R S + D RR
Sbjct: 51 GCASTRLRSPAPTLPSAASSAAPQPTPLHAAARVFSCRASYDLAVRRR 98
>08_02_0995 - 23401390-23402379
Length = 329
Score = 28.3 bits (60), Expect = 6.7
Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Frame = -1
Query: 339 RIWXXXXXXXXXXXSPGINSICWCCPGYSTAGCRLPGRKSIVIG-LDTVRDCAKMY 175
R W P IN + ++ GCR R + +G LDT+RD A+MY
Sbjct: 219 RSWGFMCAGRYGIDHPFINPLSTPAEEWAALGCR---RALVTVGELDTMRDRARMY 271
>07_03_1584 +
27907345-27907357,27907693-27908039,27908202-27908319,
27908653-27908705,27908808-27908978,27909447-27909643,
27909729-27909807,27909954-27909992,27910202-27910321,
27910417-27910518,27910654-27910737,27910832-27911074,
27911156-27911281,27911365-27911439,27911534-27911605,
27911807-27911926,27912075-27912172,27912643-27912802,
27912867-27912980,27913029-27913121,27913122-27913319,
27913404-27913497,27914032-27914192
Length = 958
Score = 28.3 bits (60), Expect = 6.7
Identities = 8/15 (53%), Positives = 9/15 (60%)
Frame = -2
Query: 593 CNVRCHSCSTWKKWW 549
C CH CST + WW
Sbjct: 810 CAPSCHDCSTLRAWW 824
>07_03_1304 - 25629822-25629839,25630091-25631148,25631784-25634928,
25635454-25636293
Length = 1686
Score = 28.3 bits (60), Expect = 6.7
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = -2
Query: 101 FHSNVSRSVVPLHLLRGTRVA 39
F S +R +V +HLLRGT +A
Sbjct: 1195 FRSTTTRKIVDVHLLRGTPIA 1215
>04_04_0677 +
27195264-27195291,27196034-27196271,27196350-27196500,
27196578-27196972,27197270-27197339,27197414-27197696,
27197972-27198297,27198409-27199368
Length = 816
Score = 28.3 bits (60), Expect = 6.7
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +2
Query: 59 VNAAEQQSGLHYYGTSYVRDQSPSIT 136
VN+A+ Q+ L YY + VRD+ S+T
Sbjct: 491 VNSADAQALLEYYDDNLVRDKEGSVT 516
>01_06_0747 -
31645136-31646521,31647870-31648142,31649080-31649148,
31649486-31649614
Length = 618
Score = 28.3 bits (60), Expect = 6.7
Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
Frame = +3
Query: 543 SIPPFLPSGTGVTSHITGITDGQPRPTLPQPVQTNYPYPQ-SNTFQTTDKPL--PALVSS 713
S PP+ +S QP+PT QP PQ SNT Q +P+ P L ++
Sbjct: 319 SFPPYQQQWPQQSSQPAPAPVAQPQPTFSQPFPPPVQQPQLSNTQQFPPQPMQQPQLSNT 378
Query: 714 Q 716
Q
Sbjct: 379 Q 379
>06_01_1169 +
9996068-9996265,9996356-9998589,9998675-9998926,
9999007-9999117,9999207-9999288,9999563-9999754
Length = 1022
Score = 27.9 bits (59), Expect = 8.8
Identities = 19/48 (39%), Positives = 22/48 (45%)
Frame = +3
Query: 522 PGASAGTSIPPFLPSGTGVTSHITGITDGQPRPTLPQPVQTNYPYPQS 665
P S P LP+ V + T T Q P P PVQT+ P PQS
Sbjct: 595 PTPPPSPSQQPPLPTPQPVQASPTSPTK-QHAPPAPPPVQTSPPTPQS 641
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,533,421
Number of Sequences: 37544
Number of extensions: 457139
Number of successful extensions: 1422
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1349
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1420
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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