Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0474
(735 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_22903| Best HMM Match : 7tm_1 (HMM E-Value=3.2e-05) 35 0.060
SB_36681| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.10
SB_39550| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.14
SB_11394| Best HMM Match : GntR (HMM E-Value=7.9) 32 0.55
SB_1824| Best HMM Match : Cupin_3 (HMM E-Value=1.6) 32 0.55
SB_39252| Best HMM Match : PEX11 (HMM E-Value=6.4e-35) 30 1.7
SB_34131| Best HMM Match : DUF1289 (HMM E-Value=3.7) 30 2.2
SB_7658| Best HMM Match : zf-B_box (HMM E-Value=0.51) 30 2.2
SB_26245| Best HMM Match : Homeobox (HMM E-Value=1.7e-32) 29 3.0
SB_40825| Best HMM Match : fn3 (HMM E-Value=0.078) 29 3.9
SB_20533| Best HMM Match : U-box (HMM E-Value=9.6e-25) 29 3.9
SB_18599| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.9
SB_19610| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.2
SB_2292| Best HMM Match : Extensin_2 (HMM E-Value=0.033) 29 5.2
SB_64| Best HMM Match : Rho_N (HMM E-Value=1.8e-07) 29 5.2
SB_46725| Best HMM Match : Extensin_2 (HMM E-Value=1.9) 28 6.8
SB_9110| Best HMM Match : DUF321 (HMM E-Value=4.5) 28 6.8
SB_52277| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.0
SB_19616| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.0
SB_19506| Best HMM Match : Viral_helicase1 (HMM E-Value=2.7) 28 9.0
>SB_22903| Best HMM Match : 7tm_1 (HMM E-Value=3.2e-05)
Length = 885
Score = 35.1 bits (77), Expect = 0.060
Identities = 15/38 (39%), Positives = 26/38 (68%)
Frame = +3
Query: 609 QPRPTLPQPVQTNYPYPQSNTFQTTDKPLPALVSSQTP 722
+PRP +P ++ +Y P S T +T +P+PA+ +S+TP
Sbjct: 504 RPRPRVPDYLRESYDLP-SITIETDKRPIPAVNTSETP 540
>SB_36681| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1081
Score = 34.3 bits (75), Expect = 0.10
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = +1
Query: 361 SNADPSSSLTVTSNSEPINSYRPWQSTQRPYFTTTPTQTHIINATISP 504
+ +P+S++ TS EP N+ P ST P T PT T + +T+ P
Sbjct: 117 NTVEPTSTVEPTSTVEPTNTVEP-TSTVEPTSTVEPTSTVVPTSTVVP 163
Score = 31.5 bits (68), Expect = 0.73
Identities = 17/44 (38%), Positives = 23/44 (52%)
Frame = +1
Query: 373 PSSSLTVTSNSEPINSYRPWQSTQRPYFTTTPTQTHIINATISP 504
P+S++ TS EP N+ P ST P T PT T +T+ P
Sbjct: 73 PTSTVEPTSTVEPTNTVEP-TSTAEPTNTVEPTNTVEPTSTVEP 115
Score = 30.3 bits (65), Expect = 1.7
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = +1
Query: 361 SNADPSSSLTVTSNSEPINSYRPWQSTQRPYFTTTPTQTHIINATISP 504
+ +P+S+ T+ EP N+ P ST P T PT T +T+ P
Sbjct: 87 NTVEPTSTAEPTNTVEPTNTVEP-TSTVEPTNTVEPTSTVEPTSTVEP 133
>SB_39550| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 158
Score = 33.9 bits (74), Expect = 0.14
Identities = 22/68 (32%), Positives = 26/68 (38%)
Frame = +3
Query: 522 PGASAGTSIPPFLPSGTGVTSHITGITDGQPRPTLPQPVQTNYPYPQSNTFQTTDKPLPA 701
P + TS P + T T T T P P P P T P + T T KP PA
Sbjct: 39 PSPTTPTSTAPTQTTPTPTTPSPTAPTQTTPTPATPTPT-TPTPKTPTPTTSTLTKPTPA 97
Query: 702 LVSSQTPP 725
+ T P
Sbjct: 98 TTPTPTKP 105
>SB_11394| Best HMM Match : GntR (HMM E-Value=7.9)
Length = 451
Score = 31.9 bits (69), Expect = 0.55
Identities = 15/38 (39%), Positives = 17/38 (44%)
Frame = -2
Query: 683 CCLKCI*LRVRIVSLNGLRKCGSWLTICYSCNVRCHSC 570
C + C RV S KC S +C SC V C SC
Sbjct: 251 CRVVCYSCRVACCSCRVHMKCSSCRVVCSSCRVACCSC 288
Score = 31.5 bits (68), Expect = 0.73
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = -2
Query: 683 CCLKCI*LRVRIVSLNGLRKCGSWLTICYSCNVRCHSC 570
C + + R+V + C S +CYSC V C+SC
Sbjct: 193 CSCRVVCYSCRVVFCSCRVACCSCRVVCYSCRVVCYSC 230
Score = 30.7 bits (66), Expect = 1.3
Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Frame = -2
Query: 701 CGQWFICC-LKCI*LRVRIVSLNGLRKCGSWLTICYSCNVRCHSC 570
C CC + + R+V + C S +CYSC V C SC
Sbjct: 123 CSCRIACCSCRVVCYSCRVVFCSCRVACCSCRVVCYSCRVACCSC 167
Score = 30.7 bits (66), Expect = 1.3
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = -2
Query: 683 CCLKCI*LRVRIVSLNGLRKCGSWLTICYSCNVRCHSC 570
C + + R+V + C S +CYSC V C SC
Sbjct: 214 CSCRVVCYSCRVVCYSCRVACCSCRVVCYSCRVACCSC 251
Score = 30.3 bits (65), Expect = 1.7
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = -2
Query: 683 CCLKCI*LRVRIVSLNGLRKCGSWLTICYSCNVRCHSC 570
C + + R+ + C S +CYSC V C+SC
Sbjct: 151 CSCRVVCYSCRVACCSCRVACCSCRVVCYSCRVVCYSC 188
Score = 30.3 bits (65), Expect = 1.7
Identities = 16/49 (32%), Positives = 20/49 (40%)
Frame = -2
Query: 701 CGQWFICCLKCI*LRVRIVSLNGLRKCGSWLTICYSCNVRCHSCSTWKK 555
C + C C R+V + C S +CYSC V C SC K
Sbjct: 227 CYSCRVACCSC-----RVVCYSCRVACCSCRVVCYSCRVACCSCRVHMK 270
Score = 29.9 bits (64), Expect = 2.2
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = -2
Query: 689 FICCLKCI*LRVRIVSLNGLRKCGSWLTICYSCNVRCHSC 570
+ C + C RV S + C S +CYSC V C SC
Sbjct: 158 YSCRVACCSCRVACCSCRVV--CYSCRVVCYSCRVACCSC 195
Score = 28.3 bits (60), Expect = 6.8
Identities = 20/74 (27%), Positives = 27/74 (36%)
Frame = -2
Query: 689 FICCLKCI*LRVRIVSLNGLRKCGSWLTICYSCNVRCHSCSTWKKWWY*SSR*CSRVHYD 510
+ C + C RV + + C S C SC V C+SC + S H
Sbjct: 256 YSCRVACCSCRVHMKCSSCRVVCSSCRVACCSCRVVCYSCRVTHAVLRVAHAVLSVAHEV 315
Query: 509 *LGEIVAFMMCVCV 468
L F+M CV
Sbjct: 316 FLMSCCVFLMSCCV 329
>SB_1824| Best HMM Match : Cupin_3 (HMM E-Value=1.6)
Length = 305
Score = 31.9 bits (69), Expect = 0.55
Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = +1
Query: 373 PSSSLTVTSNSEPI-NSYRPWQSTQRP 450
P + T+TSN EP+ N PWQ QRP
Sbjct: 139 PPAYYTITSNQEPVLNMPVPWQQQQRP 165
>SB_39252| Best HMM Match : PEX11 (HMM E-Value=6.4e-35)
Length = 239
Score = 30.3 bits (65), Expect = 1.7
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = -1
Query: 288 INSICWCCPGYSTAGCRLPGRKSIVIGLDTVRDCAKMY 175
+N++ W CPG+ AGC LP KS + T+ MY
Sbjct: 190 VNAVHWSCPGFLWAGC-LP--KSAIGLFGTISSVCLMY 224
>SB_34131| Best HMM Match : DUF1289 (HMM E-Value=3.7)
Length = 235
Score = 29.9 bits (64), Expect = 2.2
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = +3
Query: 627 PQPVQTNYPYPQSNTFQTTDKPLPALVSSQTPPLS 731
P+ V T +P+PQS QT + P S TPP+S
Sbjct: 175 PESVPTMFPFPQSQAPQTNETP----GSPDTPPVS 205
>SB_7658| Best HMM Match : zf-B_box (HMM E-Value=0.51)
Length = 472
Score = 29.9 bits (64), Expect = 2.2
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = +3
Query: 627 PQPVQTNYPYPQSNTFQTTDKPLPALVSSQTPPLS 731
P+ V T +P+PQS QT + P S TPP+S
Sbjct: 412 PESVPTMFPFPQSQAPQTNETP----GSPDTPPVS 442
>SB_26245| Best HMM Match : Homeobox (HMM E-Value=1.7e-32)
Length = 1168
Score = 29.5 bits (63), Expect = 3.0
Identities = 13/57 (22%), Positives = 27/57 (47%)
Frame = +2
Query: 41 PLLYHAVNAAEQQSGLHYYGTSYVRDQSPSITTSEAIKSASPQPRYILAQSRTVSRP 211
P + + + Q H+Y S + Q+ + T + + P+P++ L Q T++ P
Sbjct: 645 PNITVTITPPKPQHNQHFYNQSPLHHQNHNTTLLQPVTITPPKPQHTLLQPVTITPP 701
Score = 28.3 bits (60), Expect = 6.8
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +3
Query: 597 ITDGQPRPTLPQPVQTNYPYPQSNTFQTT 683
IT +P+ TL QPV P PQ NT T+
Sbjct: 683 ITPPKPQHTLLQPVTITPPKPQHNTSTTS 711
>SB_40825| Best HMM Match : fn3 (HMM E-Value=0.078)
Length = 432
Score = 29.1 bits (62), Expect = 3.9
Identities = 23/88 (26%), Positives = 36/88 (40%), Gaps = 3/88 (3%)
Frame = +3
Query: 423 STMAINTEAILHDDTDTDAHHKCNNLAQLII---MYPGASAGTSIPPFLPSGTGVTSHIT 593
+T+ I H + + CNN + + +YPG + T+ P GT T+
Sbjct: 105 ATIKITWSQPKHPNGVITGYKVCNNFTRGVPTQQLYPGGTHATTTP----RGTHATTTSR 160
Query: 594 GITDGQPRPTLPQPVQTNYPYPQSNTFQ 677
G+ Q RP T YP++N Q
Sbjct: 161 GVPTQQLRPGGTHATTTPRGYPRNNYTQ 188
>SB_20533| Best HMM Match : U-box (HMM E-Value=9.6e-25)
Length = 223
Score = 29.1 bits (62), Expect = 3.9
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +3
Query: 609 QPRPTLPQPVQTNYPYPQSNTFQT 680
QP PT P PV+T P P+ +F T
Sbjct: 126 QPTPTQPSPVRTVSPTPRGLSFDT 149
>SB_18599| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1501
Score = 29.1 bits (62), Expect = 3.9
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +2
Query: 140 SEAIKSASPQPRYILAQSRTVSRPITIDFLPGRRQPAVEYPG 265
SEA K A+ P+ +L +T+ R + PG+ P ++Y G
Sbjct: 252 SEAAKVAANAPKGVLRTPQTIQRFQQVPAQPGQTSPLLQYFG 293
>SB_19610| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 290
Score = 28.7 bits (61), Expect = 5.2
Identities = 14/41 (34%), Positives = 18/41 (43%)
Frame = +3
Query: 603 DGQPRPTLPQPVQTNYPYPQSNTFQTTDKPLPALVSSQTPP 725
D P P +P T+ PY +SN D P A + PP
Sbjct: 216 DRDPNPNEERPAHTSTPYARSNEPNDVDGPRGAPPPYRMPP 256
>SB_2292| Best HMM Match : Extensin_2 (HMM E-Value=0.033)
Length = 867
Score = 28.7 bits (61), Expect = 5.2
Identities = 19/65 (29%), Positives = 23/65 (35%)
Frame = +3
Query: 531 SAGTSIPPFLPSGTGVTSHITGITDGQPRPTLPQPVQTNYPYPQSNTFQTTDKPLPALVS 710
S GT+ PP G + I I+ G PT P + P P P P S
Sbjct: 166 SIGTTFPPTRLPGNARVNAIDQISIGTSHPTSPSQITQPPPPPPRPPPSPPPPPPPPSPS 225
Query: 711 SQTPP 725
PP
Sbjct: 226 PPRPP 230
>SB_64| Best HMM Match : Rho_N (HMM E-Value=1.8e-07)
Length = 320
Score = 28.7 bits (61), Expect = 5.2
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +3
Query: 612 PRPTLPQPVQTNYPYPQSNTFQTTDKPLPA 701
PR +P P P P+ NT KP+PA
Sbjct: 101 PRRNIPYPQPKPIPTPRKNTPNQPQKPIPA 130
>SB_46725| Best HMM Match : Extensin_2 (HMM E-Value=1.9)
Length = 496
Score = 28.3 bits (60), Expect = 6.8
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +3
Query: 600 TDGQPRPTLPQPVQTNYPYPQSNTFQTTDKPLPALVSSQTPPL 728
+D Q RP +P P + P T ++ + LP+ S T PL
Sbjct: 140 SDPQTRPAMPLPSPSRSEMPLPPTPSSSSESLPSGTKSPTKPL 182
>SB_9110| Best HMM Match : DUF321 (HMM E-Value=4.5)
Length = 199
Score = 28.3 bits (60), Expect = 6.8
Identities = 14/42 (33%), Positives = 18/42 (42%)
Frame = +3
Query: 603 DGQPRPTLPQPVQTNYPYPQSNTFQTTDKPLPALVSSQTPPL 728
+G P+P LP P P PQ + P P L S+ L
Sbjct: 6 EGLPKPQLPDPEVKGLPKPQLPDPEVESLPQPQLSDSEVKGL 47
>SB_52277| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 149
Score = 27.9 bits (59), Expect = 9.0
Identities = 14/33 (42%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Frame = +1
Query: 379 SSLTVTSNSEPI-NSYRPWQSTQRPYFTTTPTQ 474
+S +V + +EPI N+Y P Q+ + PY T T +Q
Sbjct: 30 TSGSVPNTNEPIPNTYEPIQTPKSPYQTCTGSQ 62
>SB_19616| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 463
Score = 27.9 bits (59), Expect = 9.0
Identities = 17/51 (33%), Positives = 22/51 (43%)
Frame = +3
Query: 468 DTDAHHKCNNLAQLIIMYPGASAGTSIPPFLPSGTGVTSHITGITDGQPRP 620
D H C A L+I+Y A G+ I L + T V + GIT P
Sbjct: 385 DATLHATCLLFAYLLILYVDAPLGSRILCLLMAITPVPYRLVGITSAVQPP 435
>SB_19506| Best HMM Match : Viral_helicase1 (HMM E-Value=2.7)
Length = 828
Score = 27.9 bits (59), Expect = 9.0
Identities = 10/53 (18%), Positives = 27/53 (50%)
Frame = +2
Query: 23 KFIFILPLLYHAVNAAEQQSGLHYYGTSYVRDQSPSITTSEAIKSASPQPRYI 181
K +F + ++ A+ + +H++ S+ D+ P + +A++ P+P +
Sbjct: 117 KLVFGVNDYWYRYEFAKSRGQIHWHQLSWREDRQPHVLLHQAVQEECPKPERV 169
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,794,999
Number of Sequences: 59808
Number of extensions: 544797
Number of successful extensions: 1729
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1485
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1709
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1974037988
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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