Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0474
         (735 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024790-13|AAL32247.1|  311|Caenorhabditis elegans Hypothetical...    31   0.64 
AC024817-24|AAF59584.3|  237|Caenorhabditis elegans C-type lecti...    30   1.5  
U58757-9|AAM75377.1|  503|Caenorhabditis elegans Hypothetical pr...    29   2.6  
AL117202-25|CAE18009.1|  196|Caenorhabditis elegans Hypothetical...    29   2.6  
Z93397-1|CAB07719.3|  550|Caenorhabditis elegans Hypothetical pr...    29   3.4  
AF498370-1|AAN65376.1|  550|Caenorhabditis elegans GABA-A recept...    29   3.4  
U40414-2|AAA81405.2|  634|Caenorhabditis elegans Hypothetical pr...    29   4.5  
Z69788-1|CAA93646.1|  894|Caenorhabditis elegans Hypothetical pr...    28   6.0  
Z69360-4|CAC42291.2|  732|Caenorhabditis elegans Hypothetical pr...    28   6.0  
Z69360-3|CAA93286.2|  369|Caenorhabditis elegans Hypothetical pr...    28   6.0  
Z69360-2|CAA93285.2|  780|Caenorhabditis elegans Hypothetical pr...    28   6.0  
Z49127-2|CAA88949.1|  245|Caenorhabditis elegans Hypothetical pr...    28   7.9  

>AC024790-13|AAL32247.1|  311|Caenorhabditis elegans Hypothetical
           protein Y47D7A.13 protein.
          Length = 311

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
 Frame = +2

Query: 56  AVNAAEQQSGLHYYGTSY--VRDQSPSITTSEAIKSASPQPRYILAQSRTVSRPITIDFL 229
           AV   +QQ G  Y       V++Q+P+    +A  ++  +   + AQ  TV +  T +  
Sbjct: 213 AVVTEQQQVGQGYQQQQQAPVQEQAPAPVQEQAPAASYGEQAPVQAQQETVQQ--TFEAA 270

Query: 230 PGRRQPAVEYPGQ 268
           P + QPA EY  Q
Sbjct: 271 PAQAQPAAEYGAQ 283


>AC024817-24|AAF59584.3|  237|Caenorhabditis elegans C-type lectin
           protein 83 protein.
          Length = 237

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = +1

Query: 361 SNADPSSSLTVTSNSEPINSYRPWQSTQRPYFTTTPTQTHIINATISP 504
           S A   SS T  S     N+Y P  S+  PY T + T ++  +++ SP
Sbjct: 179 STAGYGSSATPYSTDSTTNTYGPTDSSASPYPTDSSTSSYPTDSSTSP 226


>U58757-9|AAM75377.1|  503|Caenorhabditis elegans Hypothetical
           protein C01B10.6b protein.
          Length = 503

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 22/69 (31%), Positives = 29/69 (42%), Gaps = 2/69 (2%)
 Frame = +3

Query: 531 SAGTSIPPFLPSGTGVTSHITGITDGQPRPTLPQPVQTNYPYPQSNTFQTTDKP--LPAL 704
           S+ T IP  +PS TG TS +TG +      T       +     SNT  T   P   P  
Sbjct: 21  SSSTVIPSTVPSPTGDTSQVTGASSDSTGSTGSSAAPGSTVTDGSNTGSTAPVPSTTPTP 80

Query: 705 VSSQTPPLS 731
           +   T P+S
Sbjct: 81  MKFSTFPVS 89


>AL117202-25|CAE18009.1|  196|Caenorhabditis elegans Hypothetical
           protein Y47D3A.31 protein.
          Length = 196

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = +3

Query: 225 FSQEDDNLRLNIPDNTNKWN*SLDSAFNDYLFNSAAISEITMDN 356
           F+Q +  L  N   N NK    +DSA N Y  N   ++    D+
Sbjct: 108 FTQNESKLHTNTIANLNKTRLDMDSAANKYASNDTDVNRTRFDD 151


>Z93397-1|CAB07719.3|  550|Caenorhabditis elegans Hypothetical
           protein ZC482.1 protein.
          Length = 550

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 6/52 (11%)
 Frame = +3

Query: 591 TGITDGQPRP------TLPQPVQTNYPYPQSNTFQTTDKPLPALVSSQTPPL 728
           +G+ DG P+P       L + + T+    Q+N F++T KP     SS  PPL
Sbjct: 385 SGLMDGVPQPQDRRVEALEEAMSTSNTAAQNNNFESTSKP-KKRSSSPIPPL 435


>AF498370-1|AAN65376.1|  550|Caenorhabditis elegans GABA-A receptor
           subunit protein.
          Length = 550

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 6/52 (11%)
 Frame = +3

Query: 591 TGITDGQPRP------TLPQPVQTNYPYPQSNTFQTTDKPLPALVSSQTPPL 728
           +G+ DG P+P       L + + T+    Q+N F++T KP     SS  PPL
Sbjct: 385 SGLMDGVPQPQDRRVEALEEAMSTSNTAAQNNNFESTSKP-KKRSSSPIPPL 435


>U40414-2|AAA81405.2|  634|Caenorhabditis elegans Hypothetical
           protein F53B3.2 protein.
          Length = 634

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +3

Query: 615 RPTLPQPVQTNYPYPQSNTFQTTDKPLPALVSSQTP 722
           +PT P+P+ T + +P +    TT  P+P + S+  P
Sbjct: 120 KPT-PRPMPTVFTFPYTTPHFTTSTPVPEVTSTYDP 154


>Z69788-1|CAA93646.1|  894|Caenorhabditis elegans Hypothetical
           protein F09A5.2 protein.
          Length = 894

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = -2

Query: 701 CGQWFICCLKCI*LRVRIVSLN 636
           C  +F+CCLKC  L++ ++ +N
Sbjct: 367 CIAFFVCCLKCAKLKMAMMRMN 388


>Z69360-4|CAC42291.2|  732|Caenorhabditis elegans Hypothetical
           protein F25H8.5c protein.
          Length = 732

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
 Frame = +3

Query: 603 DGQPRPTLPQPVQTNYPYPQSNTFQTT-DKPLPALVSSQTPP 725
           + QP+P  PQP Q  YP PQ      T  +P P       PP
Sbjct: 150 ENQPQP--PQPQQQQYPQPQPQRGGCTYSQPQPQPQQQPQPP 189


>Z69360-3|CAA93286.2|  369|Caenorhabditis elegans Hypothetical
           protein F25H8.5b protein.
          Length = 369

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
 Frame = +3

Query: 603 DGQPRPTLPQPVQTNYPYPQSNTFQTT-DKPLPALVSSQTPP 725
           + QP+P  PQP Q  YP PQ      T  +P P       PP
Sbjct: 150 ENQPQP--PQPQQQQYPQPQPQRGGCTYSQPQPQPQQQPQPP 189


>Z69360-2|CAA93285.2|  780|Caenorhabditis elegans Hypothetical
           protein F25H8.5a protein.
          Length = 780

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
 Frame = +3

Query: 603 DGQPRPTLPQPVQTNYPYPQSNTFQTT-DKPLPALVSSQTPP 725
           + QP+P  PQP Q  YP PQ      T  +P P       PP
Sbjct: 150 ENQPQP--PQPQQQQYPQPQPQRGGCTYSQPQPQPQQQPQPP 189


>Z49127-2|CAA88949.1|  245|Caenorhabditis elegans Hypothetical
           protein F13D12.3 protein.
          Length = 245

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 17/68 (25%), Positives = 25/68 (36%)
 Frame = +3

Query: 522 PGASAGTSIPPFLPSGTGVTSHITGITDGQPRPTLPQPVQTNYPYPQSNTFQTTDKPLPA 701
           PG +    IPP +     V   +  +++  P P +P P     P P    F   +    A
Sbjct: 126 PGPAVPAVIPPVVTQPI-VPPPVPEVSEPVPEPPIPAPGPVAPPTPSGPLFGGVEPGAGA 184

Query: 702 LVSSQTPP 725
           L     PP
Sbjct: 185 LTPGVAPP 192


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,508,389
Number of Sequences: 27780
Number of extensions: 397006
Number of successful extensions: 1307
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1302
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1724918872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)