Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0474
(735 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g06990.1 68416.m00830 DC1 domain-containing protein contains ... 33 0.15
At4g32760.1 68417.m04661 VHS domain-containing protein / GAT dom... 33 0.26
At3g02540.2 68416.m00243 ubiquitin family protein contains Pfam ... 32 0.34
At3g02540.1 68416.m00242 ubiquitin family protein contains Pfam ... 32 0.34
At4g29950.2 68417.m04261 microtubule-associated protein identica... 31 0.60
At4g29950.1 68417.m04260 microtubule-associated protein identica... 31 0.60
At4g38080.1 68417.m05378 hydroxyproline-rich glycoprotein family... 30 1.4
At1g26150.1 68414.m03192 protein kinase family protein similar t... 30 1.4
At5g38560.1 68418.m04662 protein kinase family protein contains ... 30 1.8
At1g70460.1 68414.m08107 protein kinase, putative contains Pfam ... 29 2.4
At4g03260.1 68417.m00445 leucine-rich repeat family protein cont... 29 3.2
At1g71380.1 68414.m08241 glycosyl hydrolase family 9 protein sim... 29 3.2
At1g41830.1 68414.m04829 multi-copper oxidase type I family prot... 29 3.2
At1g22880.1 68414.m02856 glycosyl hydrolase family 9 protein sim... 29 3.2
At3g18950.1 68416.m02405 transducin family protein / WD-40 repea... 29 4.2
At4g00890.1 68417.m00120 proline-rich family protein contains pr... 28 5.6
At3g63520.1 68416.m07155 9-cis-epoxycarotenoid dioxygenase / neo... 28 5.6
At3g07100.1 68416.m00845 protein transport protein Sec24, putati... 28 5.6
At2g40840.1 68415.m05042 glycoside hydrolase family 77 protein c... 28 5.6
At1g05280.1 68414.m00534 fringe-related protein Similar to hypot... 28 5.6
At5g54230.1 68418.m06755 myb family transcription factor (MYB49)... 28 7.4
At4g09190.1 68417.m01520 F-box family protein contains Pfam PF00... 28 7.4
At2g16090.1 68415.m01845 zinc finger protein-related contains si... 28 7.4
At4g35240.1 68417.m05009 expressed protein contains Pfam domains... 27 9.8
At4g25870.1 68417.m03720 expressed protein contains Pfam profile... 27 9.8
At4g22470.1 68417.m03245 protease inhibitor/seed storage/lipid t... 27 9.8
At2g28240.1 68415.m03428 hydroxyproline-rich glycoprotein family... 27 9.8
At2g19390.1 68415.m02262 expressed protein 27 9.8
At2g18470.1 68415.m02151 protein kinase family protein contains ... 27 9.8
At1g61210.1 68414.m06897 WD-40 repeat family protein / katanin p... 27 9.8
At1g32610.1 68414.m04024 hydroxyproline-rich glycoprotein family... 27 9.8
>At3g06990.1 68416.m00830 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 539
Score = 33.5 bits (73), Expect = 0.15
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = -2
Query: 671 CI*LRVRIVSLNGLRKCGSWLTICYSCNVRCHSCSTWKKWWY 546
CI R + + L+ S T+ Y+C++ C S WKKW+Y
Sbjct: 494 CIVCEERCMFPSFLKATVSDSTLVYACSMNCAYDSYWKKWYY 535
>At4g32760.1 68417.m04661 VHS domain-containing protein / GAT
domain-containing protein weak similarity to hepatocyte
growth factor-regulated tyrosine kinase substrate HRS
isoform 2 [Homo sapiens] GI:9022389; contains Pfam
profiles PF00790: VHS domain, PF03127: GAT domain
Length = 838
Score = 32.7 bits (71), Expect = 0.26
Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Frame = +3
Query: 501 AQLIIMYPGASAGTSIPPFL-PSGTGVTSHITGITDGQPRPTLPQ---PVQTNYPYPQ 662
AQL P A +G+ P + P+ T T H + + P P +PQ PV N PY Q
Sbjct: 630 AQLQDYSPSAESGSPFSPGMHPTQTAFT-HAQPVNNNNPYPQIPQTGPPVNNNSPYAQ 686
Score = 27.9 bits (59), Expect = 7.4
Identities = 19/57 (33%), Positives = 23/57 (40%), Gaps = 9/57 (15%)
Frame = +3
Query: 519 YPGASAGTSIPP---------FLPSGTGVTSHITGITDGQPRPTLPQPVQTNYPYPQ 662
Y GA T+ PP + PS + G+ Q T QPV N PYPQ
Sbjct: 614 YEGAQDSTAFPPPPWEAQLQDYSPSAESGSPFSPGMHPTQTAFTHAQPVNNNNPYPQ 670
>At3g02540.2 68416.m00243 ubiquitin family protein contains Pfam
profiles PF00240: Ubiquitin family, PF00627: UBA/TS-N
domain;
Length = 299
Score = 32.3 bits (70), Expect = 0.34
Identities = 25/71 (35%), Positives = 31/71 (43%), Gaps = 5/71 (7%)
Frame = +3
Query: 525 GASAGTSIPPFL--PSGTGVT--SHITGITDGQPRPTLPQPVQTNYPYPQSNTFQTT-DK 689
G S SIPP PS + T S + RP P P T P + T T +
Sbjct: 90 GTSQAKSIPPSTSQPSISPQTPASVSAPVAPAPTRPPPPAPTPTPAPVAATETVTTPIPE 149
Query: 690 PLPALVSSQTP 722
P+PA +SS TP
Sbjct: 150 PVPATISSSTP 160
>At3g02540.1 68416.m00242 ubiquitin family protein contains Pfam
profiles PF00240: Ubiquitin family, PF00627: UBA/TS-N
domain;
Length = 419
Score = 32.3 bits (70), Expect = 0.34
Identities = 25/71 (35%), Positives = 31/71 (43%), Gaps = 5/71 (7%)
Frame = +3
Query: 525 GASAGTSIPPFL--PSGTGVT--SHITGITDGQPRPTLPQPVQTNYPYPQSNTFQTT-DK 689
G S SIPP PS + T S + RP P P T P + T T +
Sbjct: 90 GTSQAKSIPPSTSQPSISPQTPASVSAPVAPAPTRPPPPAPTPTPAPVAATETVTTPIPE 149
Query: 690 PLPALVSSQTP 722
P+PA +SS TP
Sbjct: 150 PVPATISSSTP 160
>At4g29950.2 68417.m04261 microtubule-associated protein identical
to microtubule-associated protein GI:5032258 from
[Arabidopsis thaliana]; similar to TBC1 domain family
member 5 (Swiss-Prot:Q92609) [Homo sapiens]; contains
Pfam profile PF00566: TBC domain
Length = 703
Score = 31.5 bits (68), Expect = 0.60
Identities = 15/67 (22%), Positives = 32/67 (47%)
Frame = +2
Query: 62 NAAEQQSGLHYYGTSYVRDQSPSITTSEAIKSASPQPRYILAQSRTVSRPITIDFLPGRR 241
N ++ + + + V+D+ S+ S S+ P +I++ S+ + LP
Sbjct: 489 NDSDSSNESNLFPDETVKDRETSVVDSPLSISSQPSMEFIVSLSKDQETSVVDSPLPVSS 548
Query: 242 QPAVEYP 262
QP++E+P
Sbjct: 549 QPSIEFP 555
>At4g29950.1 68417.m04260 microtubule-associated protein identical
to microtubule-associated protein GI:5032258 from
[Arabidopsis thaliana]; similar to TBC1 domain family
member 5 (Swiss-Prot:Q92609) [Homo sapiens]; contains
Pfam profile PF00566: TBC domain
Length = 828
Score = 31.5 bits (68), Expect = 0.60
Identities = 15/67 (22%), Positives = 32/67 (47%)
Frame = +2
Query: 62 NAAEQQSGLHYYGTSYVRDQSPSITTSEAIKSASPQPRYILAQSRTVSRPITIDFLPGRR 241
N ++ + + + V+D+ S+ S S+ P +I++ S+ + LP
Sbjct: 614 NDSDSSNESNLFPDETVKDRETSVVDSPLSISSQPSMEFIVSLSKDQETSVVDSPLPVSS 673
Query: 242 QPAVEYP 262
QP++E+P
Sbjct: 674 QPSIEFP 680
>At4g38080.1 68417.m05378 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965; Common family member: At2g22510
[Arabidopsis thaliana]
Length = 128
Score = 30.3 bits (65), Expect = 1.4
Identities = 17/39 (43%), Positives = 20/39 (51%)
Frame = +3
Query: 612 PRPTLPQPVQTNYPYPQSNTFQTTDKPLPALVSSQTPPL 728
P P+LP P Q P PQ Q T LP + S+Q P L
Sbjct: 55 PVPSLPTPGQQTLPQPQPTLPQPTG--LPPMPSTQIPSL 91
>At1g26150.1 68414.m03192 protein kinase family protein similar to
Pto kinase interactor 1 GI:3668069 from [Lycopersicon
esculentum]
Length = 760
Score = 30.3 bits (65), Expect = 1.4
Identities = 21/68 (30%), Positives = 31/68 (45%)
Frame = +3
Query: 522 PGASAGTSIPPFLPSGTGVTSHITGITDGQPRPTLPQPVQTNYPYPQSNTFQTTDKPLPA 701
PG+ T PP PS + H + P TLP P + P P +++ T P +
Sbjct: 234 PGSKRPTPSPPS-PSDSKRPVHPS--PPSPPEETLPPPKPSPDPLPSNSSSPPTLLPPSS 290
Query: 702 LVSSQTPP 725
+VS +PP
Sbjct: 291 VVSPPSPP 298
>At5g38560.1 68418.m04662 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 681
Score = 29.9 bits (64), Expect = 1.8
Identities = 23/71 (32%), Positives = 28/71 (39%), Gaps = 3/71 (4%)
Frame = +3
Query: 522 PGASAGTSIPPF-LPSGTGVTSHITGITDGQPRPT--LPQPVQTNYPYPQSNTFQTTDKP 692
P A T+ PP PS G T G T P+P+ P P T P P T +
Sbjct: 125 PPAPTTTNPPPKPSPSPPGETPSPPGETPSPPKPSPSTPTPTTTTSPPPPPATSASPPSS 184
Query: 693 LPALVSSQTPP 725
P S+ PP
Sbjct: 185 NPTDPSTLAPP 195
Score = 28.3 bits (60), Expect = 5.6
Identities = 19/77 (24%), Positives = 35/77 (45%), Gaps = 3/77 (3%)
Frame = +3
Query: 510 IIMYPGASAGTSIPPFLPSGTGVTSHITGITDGQPRPTLPQPVQTNYPYP---QSNTFQT 680
I+ P +++ T+ PP L + S +T P P PV ++ P P S +
Sbjct: 9 ILSPPSSNSSTTAPPPLQTQPTTPSAPPPVTPPPSPPQSPPPVVSSSPPPPVVSSPPPSS 68
Query: 681 TDKPLPALVSSQTPPLS 731
+ P P +++S P ++
Sbjct: 69 SPPPSPPVITSPPPTVA 85
>At1g70460.1 68414.m08107 protein kinase, putative contains Pfam
PF00069: Protein kinase domain
Length = 710
Score = 29.5 bits (63), Expect = 2.4
Identities = 19/72 (26%), Positives = 28/72 (38%), Gaps = 1/72 (1%)
Frame = +3
Query: 513 IMYPGASAGTSIPPFLPSGTGVTSHITGITDGQPRPTLPQPVQTNYPYP-QSNTFQTTDK 689
+ P + + PP L S +T P P P P+ +P P S ++T+
Sbjct: 58 VFSPPPTVSSPPPPPLDSSPPPPPDLTPPPSSPPPPDAPPPIPIVFPPPIDSPPPESTNS 117
Query: 690 PLPALVSSQTPP 725
P P V PP
Sbjct: 118 PPPPEVFEPPPP 129
>At4g03260.1 68417.m00445 leucine-rich repeat family protein
contains leucine rich repeat (LRR) domains, Pfam:PF00560
Length = 677
Score = 29.1 bits (62), Expect = 3.2
Identities = 12/24 (50%), Positives = 18/24 (75%)
Frame = +2
Query: 62 NAAEQQSGLHYYGTSYVRDQSPSI 133
N+ EQQSG+H G+S D+SP++
Sbjct: 119 NSLEQQSGIHEAGSSKRVDESPNL 142
>At1g71380.1 68414.m08241 glycosyl hydrolase family 9 protein
similar to beta-glucanase GB:AAB72171
Length = 484
Score = 29.1 bits (62), Expect = 3.2
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Frame = -3
Query: 352 SMVISDMAAELKR*SLKAESRD*FHLLV-LSGIFNRRLSSSWEKIYRNRSGYRPRLCQNV 176
SMV + ++ R L A ++D + G ++ LSSS Y + SGY+ L
Sbjct: 182 SMVFRKVDSKYSR-LLLATAKDVMQFAIQYQGAYSDSLSSSVCPFYCSYSGYKDELMWGA 240
Query: 175 SWLRRS 158
SWL R+
Sbjct: 241 SWLLRA 246
>At1g41830.1 68414.m04829 multi-copper oxidase type I family protein
similar to pollen-specific BP10 protein
[SP|Q00624][Brassica napus]; contains Pfam profile:
PF00394 Multicopper oxidase
Length = 542
Score = 29.1 bits (62), Expect = 3.2
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = +3
Query: 552 PFLPSGTGVTSHITGITDGQPRPTLPQPVQTNYPY 656
PFL S GV + DG T P P ++NY Y
Sbjct: 80 PFLISWNGVQNRRNSYVDGMYGTTCPIPPRSNYTY 114
>At1g22880.1 68414.m02856 glycosyl hydrolase family 9 protein
similar to GB:AAB65156 and GB:AAA96135
Length = 484
Score = 29.1 bits (62), Expect = 3.2
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = -3
Query: 262 GIFNRRLSSSWEKIYRNRSGYRPRLCQNVSWLRRSRFD 149
G ++ LSSS Y + SGY+ L +WL R+ D
Sbjct: 212 GAYSNSLSSSVCPFYCSYSGYKDELLWGAAWLHRATND 249
>At3g18950.1 68416.m02405 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to En/Spm-like transposon protein GI:2739374
from [Arabidopsis thaliana]; no characterized homologs
Length = 473
Score = 28.7 bits (61), Expect = 4.2
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = +1
Query: 376 SSSLTVTSNSEPINSYRPWQSTQRPYFTTT 465
S++ T + S P PW T PY+T T
Sbjct: 63 SNASTTSGESSPNQVLSPWNQTYSPYYTDT 92
>At4g00890.1 68417.m00120 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 431
Score = 28.3 bits (60), Expect = 5.6
Identities = 19/63 (30%), Positives = 26/63 (41%), Gaps = 3/63 (4%)
Frame = +3
Query: 552 PFLPSGTGVTSHITGITDGQPRPTLPQPVQTNY---PYPQSNTFQTTDKPLPALVSSQTP 722
P P T T + QP P L V+T + P + T T P+P ++TP
Sbjct: 124 PKTPLSPSSTLKATEESQSQPSPPLESIVETWFRPSPPTSTETGDETQLPIPPPQEAKTP 183
Query: 723 PLS 731
P S
Sbjct: 184 PSS 186
>At3g63520.1 68416.m07155 9-cis-epoxycarotenoid dioxygenase /
neoxanthin cleavage enzyme / NCED1 / carotenoid cleavage
dioxygenase 1 (CCD1) identical to putative
9-cis-epoxy-carotenoid dioxygenase [GI:3096910];
contains Pfam profile PF03055: Retinal pigment
epithelial membrane protein
Length = 538
Score = 28.3 bits (60), Expect = 5.6
Identities = 15/41 (36%), Positives = 18/41 (43%)
Frame = +1
Query: 103 FLRSGPKSKHYYIRGYQICFSSTTIHFGTIADGIQTYYDRF 225
F+R GP K + GY IH I DG TY R+
Sbjct: 79 FVRVGPNPKFDAVAGYHWFDGDGMIHGVRIKDGKATYVSRY 119
>At3g07100.1 68416.m00845 protein transport protein Sec24, putative
similar to protein transport protein Sec24A
(SEC24-related protein) [Homo sapiens] SWISS-PROT:O95486
Length = 1038
Score = 28.3 bits (60), Expect = 5.6
Identities = 16/48 (33%), Positives = 21/48 (43%)
Frame = +3
Query: 531 SAGTSIPPFLPSGTGVTSHITGITDGQPRPTLPQPVQTNYPYPQSNTF 674
SA PF SG + + GQP P + Q + P P SN+F
Sbjct: 50 SASQPTRPFTASGPPPAPPVGTMRPGQPSPFVSQIPGSRPPPPSSNSF 97
>At2g40840.1 68415.m05042 glycoside hydrolase family 77 protein
contains Pfam profiles PF02446:
4-alpha-glucanotransferase, PF00686: Starch binding
domain; contains a non-consensus AT-AC intron between at
intron 5
Length = 955
Score = 28.3 bits (60), Expect = 5.6
Identities = 8/15 (53%), Positives = 9/15 (60%)
Frame = -2
Query: 593 CNVRCHSCSTWKKWW 549
C CH CST + WW
Sbjct: 804 CAPSCHDCSTLRAWW 818
>At1g05280.1 68414.m00534 fringe-related protein Similar to
hypothetical protein PID|e327464 (gb|Z97338) various
hypothetical proteins from Arabidopsis thaliana strong
similarity to unknown protein (pir||T13026) similarity
to predicted proteins + similar to hypothetical protein
GB:AAC23643 [Arabidopsis thaliana] + weak similarity to
Fringe [Schistocerca gregaria](GI:6573138);Fringe
encodes an extracellular protein that regulates Notch
signalling.
Length = 461
Score = 28.3 bits (60), Expect = 5.6
Identities = 19/44 (43%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Frame = +2
Query: 26 FIFILPLLYHAVNAAEQQS--GLHYYGTSYVRDQSPSITTSEAI 151
F+FIL L+Y ++A+ QS +H Y +S +DQS S T E I
Sbjct: 31 FVFIL-LVYLLISASRLQSKNSIHAYFSSSDQDQSQSPTKIEHI 73
>At5g54230.1 68418.m06755 myb family transcription factor (MYB49)
contains Pfam profile: PF00249 myb-like DNA-binding
domain
Length = 319
Score = 27.9 bits (59), Expect = 7.4
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +1
Query: 364 NADPSSSLTVTSNSEPINSYRPWQSTQRPYFTTTPTQTHIINAT 495
N D + LT + N+ SY+P Q Q T T T ++N+T
Sbjct: 163 NPDILNHLTASLNNVQTESYQPNQQLQNDLNTDQTTFTGLLNST 206
>At4g09190.1 68417.m01520 F-box family protein contains Pfam
PF00646: F-box domain; contains TIGRFAM TIGR01640 :
F-box protein interaction domain; similar to Probable
disease resistance RPP8-like protein 2
(Swiss-Prot:Q9MAG6) [Arabidopsis thaliana]
Length = 383
Score = 27.9 bits (59), Expect = 7.4
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = +1
Query: 97 WNFLRSGPKSKHYYIRGYQICFSSTTIHFGTIADGIQ 207
W L G S HY + GY C + G+ DG++
Sbjct: 191 WRILSKGFLS-HYKVTGYAKCIDGVIYYEGSFGDGLR 226
>At2g16090.1 68415.m01845 zinc finger protein-related contains
similarity to zinc finger proteins and Pfam domain,
PF01485: IBR domain
Length = 593
Score = 27.9 bits (59), Expect = 7.4
Identities = 10/28 (35%), Positives = 15/28 (53%), Gaps = 3/28 (10%)
Frame = -2
Query: 626 KCGSWLTICYSCNVRCH---SCSTWKKW 552
+C L C+SC+ + H SC W+ W
Sbjct: 236 ECSCGLQFCFSCSSQAHSPCSCVMWELW 263
>At4g35240.1 68417.m05009 expressed protein contains Pfam domains,
PF04782: Protein of unknown function (DUF632) and
PF04783: Protein of unknown function (DUF630)
Length = 828
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 5/35 (14%)
Frame = +3
Query: 609 QPRPTLPQPV-----QTNYPYPQSNTFQTTDKPLP 698
+ RPT PQ V ++YPYP N++ P+P
Sbjct: 210 EQRPTSPQRVYIGESSSSYPYPPQNSYFGYSNPVP 244
>At4g25870.1 68417.m03720 expressed protein contains Pfam profile
PF03267: Arabidopsis protein of unknown function, DUF266
Length = 389
Score = 27.5 bits (58), Expect = 9.8
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = -2
Query: 494 VAFMMCVCVGVVVKYGLCVDCHGRYELIGSE 402
V M+ +C + K+G CHG Y G E
Sbjct: 29 VTSMLLICTHMYPKHGKSSSCHGLYSTRGCE 59
>At4g22470.1 68417.m03245 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein similar to
hydroxyproline-rich glycoprotein DZ-HRGP from Volvox
carteri f. nagariensis GP|6523547; contains Pfam profile
PF00234 Protease inhibitor/seed storage/LTP family
Length = 375
Score = 27.5 bits (58), Expect = 9.8
Identities = 18/42 (42%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Frame = +3
Query: 612 PRPTL---PQPVQTNYPYPQSNTFQTTDKPLPALVSSQTPPL 728
P PT+ P P QT P P QTT P PA+ +PPL
Sbjct: 256 PSPTISPPPLPPQTLKPPPP----QTTPPPPPAITPPLSPPL 293
>At2g28240.1 68415.m03428 hydroxyproline-rich glycoprotein family
protein
Length = 660
Score = 27.5 bits (58), Expect = 9.8
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 6/45 (13%)
Frame = +3
Query: 609 QPRPTLPQPVQTNY-PYPQSNT-FQTTDKPLPAL----VSSQTPP 725
QPR PQP + P QSNT +T P P++ +S Q+PP
Sbjct: 535 QPRSKTPQPKPVSQPPAKQSNTEINSTPHPRPSVTSKAISLQSPP 579
>At2g19390.1 68415.m02262 expressed protein
Length = 1211
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +3
Query: 609 QPRPTLPQPVQTNYPYPQSNTFQTTDKPLPALVSSQTP 722
QP+P+LP+P + N Y + T+ P+ L Q P
Sbjct: 1131 QPKPSLPKPNEANSEYNNLEALEETE-PILDLSQLQIP 1167
>At2g18470.1 68415.m02151 protein kinase family protein contains
Pfam PF00069: Protein kinase domain
Length = 633
Score = 27.5 bits (58), Expect = 9.8
Identities = 14/33 (42%), Positives = 15/33 (45%)
Frame = +3
Query: 627 PQPVQTNYPYPQSNTFQTTDKPLPALVSSQTPP 725
P T+ P P SNT TT P S TPP
Sbjct: 9 PPTNSTSSPSPPSNTNSTTSSPPAPSPPSPTPP 41
>At1g61210.1 68414.m06897 WD-40 repeat family protein / katanin p80
subunit, putative contains 5 WD-40 repeats (PF00400);
similar to katanin p80 subunit (GI:3005601)
[Strongylocentrotus purpuratus]
Length = 1180
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +3
Query: 540 TSIPPFLPSGTGVTSHITGITDGQPRPTLPQPV 638
TS P S T +TS ++G+T + T P PV
Sbjct: 712 TSTRPDRTSATNLTSDVSGVTSKRQTRTSPAPV 744
Score = 27.5 bits (58), Expect = 9.8
Identities = 16/51 (31%), Positives = 23/51 (45%)
Frame = +3
Query: 540 TSIPPFLPSGTGVTSHITGITDGQPRPTLPQPVQTNYPYPQSNTFQTTDKP 692
TS P PS T +TS + +T + T P PV + T +D+P
Sbjct: 814 TSTRPDRPSATNLTSDESPVTSTRQAKTSPAPVTPVILNQRQTTNMKSDEP 864
>At1g32610.1 68414.m04024 hydroxyproline-rich glycoprotein family
protein
Length = 291
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +3
Query: 564 SGTGVTSHITGITDGQPRPTLPQPVQTNYPYPQ 662
S TS + +TD R +LPQP+ N PQ
Sbjct: 34 SNNDFTSIVQQLTDSPSRESLPQPLPRNLLKPQ 66
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,427,956
Number of Sequences: 28952
Number of extensions: 360214
Number of successful extensions: 1294
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 1187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1287
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1614253080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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