Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0473
         (766 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16G5.09 |||serine carboxypeptidase |Schizosaccharomyces pomb...    28   1.7  
SPBC428.13c |mob1||protein kinase regulator Mob1|Schizosaccharom...    28   1.7  
SPBC405.01 |ade1|min4, SPBC4C3.02c|phosphoribosylamine-glycine l...    27   2.9  
SPCC550.04c |gpi2||pig-C|Schizosaccharomyces pombe|chr 3|||Manual      27   3.9  
SPAC17H9.03c |rdl1||RAD51D-like protein 1|Schizosaccharomyces po...    26   6.8  

>SPBC16G5.09 |||serine carboxypeptidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 510

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +2

Query: 443 NRTSTYERFLNYVHPKGFIDIKTDVVALIMKYLFYCLI 556
           N  S YE +LNY+  KG +D ++++   +      CL+
Sbjct: 207 NPLSHYETYLNYLVEKGMVDFESELGQYLHHSWAECLL 244


>SPBC428.13c |mob1||protein kinase regulator
           Mob1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 210

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 8/71 (11%)
 Frame = -1

Query: 217 YSKDIIFMAP*YIVN-----KKK---KKEFIANVNLLFTSV*KHIITVVERFLQILIRFF 62
           Y+K     AP YI N     ++K   KK F   + + F    K+   V+++  + L R +
Sbjct: 101 YTKPTRMSAPDYINNLLDWTQEKLDDKKLFPTEIGVEFP---KNFRKVIQQIFRRLFRIY 157

Query: 61  SHGFCLHFYII 29
           +H +C HF+++
Sbjct: 158 AHIYCSHFHVM 168


>SPBC405.01 |ade1|min4, SPBC4C3.02c|phosphoribosylamine-glycine
           ligase |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 788

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = +2

Query: 449 TSTYERFLNYVHPKGFIDIKT-DVV 520
           T+ Y+ F NY H K F+D  T DVV
Sbjct: 125 TAVYKSFSNYDHAKSFLDTCTFDVV 149


>SPCC550.04c |gpi2||pig-C|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 324

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 12/46 (26%), Positives = 26/46 (56%)
 Frame = +3

Query: 60  LKNRIKICRNLSTTVIMCFYTDVNNRLTFAMNSFFFFLFTMYQGAI 197
           ++  +++  +LST   +     + +RL  ++N FFF LF ++  A+
Sbjct: 195 IRPHVRLHNSLSTNAALSASVVLASRLEKSINVFFFILFAVHWFAL 240


>SPAC17H9.03c |rdl1||RAD51D-like protein 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 230

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -3

Query: 188 LIHCEQKKKKRIHCKR*SVIHVGVETHYY 102
           L+HC Q +K  + C +  ++  G  TH Y
Sbjct: 169 LVHCNQSRKDLLGCSQLFLLLKGSFTHEY 197


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,067,161
Number of Sequences: 5004
Number of extensions: 63306
Number of successful extensions: 116
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)