BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e40h0473 (766 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC16G5.09 |||serine carboxypeptidase |Schizosaccharomyces pomb... 28 1.7 SPBC428.13c |mob1||protein kinase regulator Mob1|Schizosaccharom... 28 1.7 SPBC405.01 |ade1|min4, SPBC4C3.02c|phosphoribosylamine-glycine l... 27 2.9 SPCC550.04c |gpi2||pig-C|Schizosaccharomyces pombe|chr 3|||Manual 27 3.9 SPAC17H9.03c |rdl1||RAD51D-like protein 1|Schizosaccharomyces po... 26 6.8 >SPBC16G5.09 |||serine carboxypeptidase |Schizosaccharomyces pombe|chr 2|||Manual Length = 510 Score = 27.9 bits (59), Expect = 1.7 Identities = 12/38 (31%), Positives = 21/38 (55%) Frame = +2 Query: 443 NRTSTYERFLNYVHPKGFIDIKTDVVALIMKYLFYCLI 556 N S YE +LNY+ KG +D ++++ + CL+ Sbjct: 207 NPLSHYETYLNYLVEKGMVDFESELGQYLHHSWAECLL 244 >SPBC428.13c |mob1||protein kinase regulator Mob1|Schizosaccharomyces pombe|chr 2|||Manual Length = 210 Score = 27.9 bits (59), Expect = 1.7 Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 8/71 (11%) Frame = -1 Query: 217 YSKDIIFMAP*YIVN-----KKK---KKEFIANVNLLFTSV*KHIITVVERFLQILIRFF 62 Y+K AP YI N ++K KK F + + F K+ V+++ + L R + Sbjct: 101 YTKPTRMSAPDYINNLLDWTQEKLDDKKLFPTEIGVEFP---KNFRKVIQQIFRRLFRIY 157 Query: 61 SHGFCLHFYII 29 +H +C HF+++ Sbjct: 158 AHIYCSHFHVM 168 >SPBC405.01 |ade1|min4, SPBC4C3.02c|phosphoribosylamine-glycine ligase |Schizosaccharomyces pombe|chr 2|||Manual Length = 788 Score = 27.1 bits (57), Expect = 2.9 Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 1/25 (4%) Frame = +2 Query: 449 TSTYERFLNYVHPKGFIDIKT-DVV 520 T+ Y+ F NY H K F+D T DVV Sbjct: 125 TAVYKSFSNYDHAKSFLDTCTFDVV 149 >SPCC550.04c |gpi2||pig-C|Schizosaccharomyces pombe|chr 3|||Manual Length = 324 Score = 26.6 bits (56), Expect = 3.9 Identities = 12/46 (26%), Positives = 26/46 (56%) Frame = +3 Query: 60 LKNRIKICRNLSTTVIMCFYTDVNNRLTFAMNSFFFFLFTMYQGAI 197 ++ +++ +LST + + +RL ++N FFF LF ++ A+ Sbjct: 195 IRPHVRLHNSLSTNAALSASVVLASRLEKSINVFFFILFAVHWFAL 240 >SPAC17H9.03c |rdl1||RAD51D-like protein 1|Schizosaccharomyces pombe|chr 1|||Manual Length = 230 Score = 25.8 bits (54), Expect = 6.8 Identities = 10/29 (34%), Positives = 16/29 (55%) Frame = -3 Query: 188 LIHCEQKKKKRIHCKR*SVIHVGVETHYY 102 L+HC Q +K + C + ++ G TH Y Sbjct: 169 LVHCNQSRKDLLGCSQLFLLLKGSFTHEY 197 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 3,067,161 Number of Sequences: 5004 Number of extensions: 63306 Number of successful extensions: 116 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 111 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 116 length of database: 2,362,478 effective HSP length: 71 effective length of database: 2,007,194 effective search space used: 367316502 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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