Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0473
         (766 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    25   1.0  
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    25   1.0  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    24   1.3  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    23   4.1  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   9.5  

>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
 Frame = -3

Query: 476 NSKN--VRMLRFGCVYKNKVVNIIKRAQ*QFVSNHIISILTITKKTNKQ 336
           NSK   +R+L+  CV +     I+ +     V NHI +I  I K TN++
Sbjct: 24  NSKKTIMRILKEVCVLQANRACILIKDLFDNVHNHIQNIFKIIKSTNEK 72


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 110

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
 Frame = -3

Query: 476 NSKN--VRMLRFGCVYKNKVVNIIKRAQ*QFVSNHIISILTITKKTNKQ 336
           NSK   +R+L+  CV +     I+ +     V NHI +I  I K TN++
Sbjct: 7   NSKKTIMRILKEVCVLQANRACILIKDLFDNVHNHIQNIFKIIKSTNEK 55


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = +3

Query: 114 FYTDVNNRLTFAMNSFFFFLFTMYQGAINIMSFEY*N 224
           +Y D+N  L       ++F  T+     N+MS +Y N
Sbjct: 301 YYPDLNEWLYILSGCLYYFSTTINPILYNLMSIKYRN 337


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = +3

Query: 276 EYFFLCTRECQRFINRFKSLLFVCFFRYCQNANNMVRNKLLLCAFNDIDN 425
           EY    + + Q+FIN   +   V F     N N+++ N    CA +D  N
Sbjct: 543 EYMMALSMKLQKFINNDYNFNEVNFRILGANVNDLIMN--TRCANSDNQN 590


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = -1

Query: 160  KEFIANVNLLFTSV*KHIITVVERFLQILIRFFSHG 53
            K F+AN+NL+   V   ++ +V   +  ++R   HG
Sbjct: 1579 KIFMANLNLVVPVVAAILVIIVAVIVICVLRGKGHG 1614


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,543
Number of Sequences: 438
Number of extensions: 4628
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23911269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)