Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0472
         (698 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos...    28   1.5  
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch...    27   2.6  
SPAC17G8.06c |||dihydroxy-acid dehydratase|Schizosaccharomyces p...    27   3.4  

>SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein
           Pof11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 506

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = -3

Query: 258 HIRQLHLT-FRHACA*VVSLWVRRHLPRLSPYHCRCPGEIWKVLVQDP 118
           H+R L  T F       VSL V  +L +L    C+   + WK L++DP
Sbjct: 63  HVRSLLFTDFTEVFPEEVSLRVFSYLDQLDLCKCKLMSKRWKRLLEDP 110


>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1822

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -1

Query: 536 IYFKILRISN*QYIYKSKKILVISKLCLS 450
           +YF +L + N  Y  K   +L+I ++CL+
Sbjct: 509 VYFPMLDLKNTSYNQKLHTLLIIQRICLN 537


>SPAC17G8.06c |||dihydroxy-acid dehydratase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 598

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = -2

Query: 139 EGPGAGSLAPLEPLAEFSAALGAGIGSSVSVTSRQEF 29
           EGP  G   P E L   SA +GAG+G  V++ +   F
Sbjct: 475 EGPKGGPGMP-EMLKPSSAIMGAGLGKDVALLTDGRF 510


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,499,284
Number of Sequences: 5004
Number of extensions: 48144
Number of successful extensions: 93
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)